BAC Information

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BAC

Clone NameMSMg01-445G09
Chromosome8 (Build37)
Map Location 42,131,456 - 42,271,593
singlet/doubletdoublet
Overlap geneMtus1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl
Downstream geneFgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445G09.T7 (MSMg01no445_g09.b1)MSMg01-445G09.TJ (MSMg01no445_g09.g1)
ACCAG534339AG534340
length726765
length of high quality
(start - end)
243 (65 - 307)451 (70 - 520)
definitionCHROMAT_FILE: MSMg01no445_g09.b1 PHD_FILE: MSMg01no445_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:35 2005CHROMAT_FILE: MSMg01no445_g09.g1 PHD_FILE: MSMg01no445_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,271,353 - 42,271,593)(42,131,456 - 42,131,906)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
TCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCCGAATAA
ACCCTTTCCTCCCCAAATTGTTTCTTGGTCATGATGTTTGTGCAGGAATA
GACACCCTGACTAAGACAAATGTTCTTGGTTATTTACCCTCCTGCCTAGA
TTGGGCTTGTTTTCTGAAGACACAGGAACACAAGATGCTTTAAAGGTGTT
CCCACATTCTAGACACACTCTTTTTTACCTCTGTGTGAAGAAAGAATCCA
ATGCCTTCCTGGTTTACTGGGNCATTCACACCTCCTAACATAGTTAGTCC
CTTGTTTAGTGCACCAGTATCAGGAGCTCCATAGAGCCAGGAGGGACTCT
TAACTTCCAACTCAATGGGATATTTGCTGTGCCCACTGGCAAAATGGCTC
CTCCTTCGAGAACTCAAACTTTTTAGGCCTGAAGAACACAGGGCCACAGG
AACAGAAAGCATTTTTTTTTCCTAGTGGGTCACTATGGGTGATAGTGAAT
GGATCTAAATATTTATTTCTTTAATTTACAACATAAAAAACATTCCATAG
TGGTCTGACGAGATGCTTCATCTGGCATTTTTCTTTTTTTTTTTCCCAAG
GTTCTGATGCTCCATCCCAGCCATCTTCCCTAATGAGATCTGATGCCCTC
TTCCGTTGCCTTGCACTTTTACTATG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATAGTGTAATACCCTTTAAATAAACCACAC
CGGCTAGACCTCTGGAAGGTGGTTCATAGCCTCAGTGGGTTTCCCCACTT
GCTTTGAGGGTTTCCTAGAACACATCAGGGTGGGATTGGGGAGGCGCCTT
CAATGTAAAGCCATGAAAAGCGATCAACAAGAAGTACTGTTAGCCTCGAT
AGCAGTAGCAGCAGGGGCAGCTACCATGTGAGAGCTAGGGATGAAAATAG
TCTACACGGTTATACCCATTCCCACACTGGGATTTATCTCCTGAACATTC
CCGTGCAGCCAGACGAGAAACTCAAGCCCTGGAGAGGCTTAGCAAGTAGC
CAGAGGTCAGGACGGAAATAGAGAGGAGGAGAATCAAGATTTACACCAAC
GTCCGAGCCGCACAAGGTCACAGCTTCTTCATTGTCTTCGGAGGTAACAG
AATTTCTTTACAATAACTGTTAAACTAAAATAATGATGGAAATTTTCCAA
TATTATTTCATAAACTCCCCCCTCAACCATTCCCGAAAAAAAAAAAAAAA
CCCTTCAATCAGGGGCTTGGAGAGATGGGTTCACAGATTAAACCCATTAA
TTGGGGAACAAGGTTTCACTTCCCCCAAACCTATAGGGGGGTTTCACAAA
TACTTTCCCACTCCTGGGGTGGGGACCCCGGTTTTTTGTGTTCTTCAAGG
CAAGGAAAACGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_g09.b1 MSMg01no445_g09.b1 CHROMAT_FILE:
MSMg01no445_g09.b1 PHD_FILE: MSMg01no445_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:35 2005
         (243 letters)



>mm_chr8_42271049_42271691
          Length = 643

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgatgaacagcagtatggaagtgtaagccgaataaaccctttcctccccaaattgtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtgatgaacagcagtatggaagtgtaagccgaataaaccctttcctccccaaattgtttc 486

                                                                       
Query: 61  ttggtcatgatgtttgtgcaggaatagacaccctgactaagacaaatgttcttggttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttggtcatgatgtttgtgcaggaatagacaccctgactaagacaaatgttcttggttatt 426

                                                                       
Query: 121 taccctcctgcctagattgggcttgttttctgaagacacaggaacacaagatgctttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 425 taccctcctgcctagattgggcttgttttctgaagacacaggaacacaagatgccctaaa 366

                                                                       
Query: 181 ggtgttcccacattctagacacactcttttttacctctgtgtgaagaaagaatccaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggtgttcccacattctagacacactcttttttacctctgtgtgaagaaagaatccaatgc 306

            
Query: 241 c 241
           |
Sbjct: 305 c 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no445_g09.g1 MSMg01no445_g09.g1 CHROMAT_FILE:
MSMg01no445_g09.g1 PHD_FILE: MSMg01no445_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:35 2005
         (451 letters)



>mm_chr8_42131256_42132106
          Length = 851

 Score =  857 bits (443), Expect = 0.0
 Identities = 449/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagtgtaataccctttaaataaaccacaccggctagacctctggaaggtggttcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagtgtaataccctttaaataaaccacaccggctagacctctggaaggtggttcatag 260

                                                                       
Query: 61  cctcagtgggtttccccacttgctttgagggtttcctagaacacatcagggtgggattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagtgggtttccccacttgctttgagggtttcctagaacacatcagggtgggattgg 320

                                                                       
Query: 121 ggaggcgccttcaatgtaaagccatgaaaagcgatcaacaagaagtactgttagcctcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaggcgccttcaatgtaaagccatgaaaagcgatcaacaagaagtactgttagcctcga 380

                                                                       
Query: 181 tagcagtagcagcaggggcagctaccatgtgagagctagggatgaaaatagtctacacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcagtagcagcaggggcagctaccatgtgagagctagggatgaaaatagtctacacgg 440

                                                                       
Query: 241 ttatacccattcccacactgggatttatctcctgaacattcccgtgcagccagacgagaa 300
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaacccattcccacactgggatttatctcctgaacattcccgtgcagccagacgagaa 500

                                                                       
Query: 301 actcaagccctggagaggcttagcaagtagccagaggtcaggacggaaatagagaggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcaagccctggagaggcttagcaagtagccagaggtcaggacggaaatagagaggagg 560

                                                                       
Query: 361 agaatcaagatttacaccaacgtccgagccgcacaaggtcacagcttcttcattgtcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatcaagatttacaccaacgtccgagccgcacaaggtcacagcttcttcattgtcttc 620

                                          
Query: 421 ggaggtaacagaatttctttacaataactgt 451
           |||||||||||||||||||||||||||||||
Sbjct: 621 ggaggtaacagaatttctttacaataactgt 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)