BAC Information

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BAC

Clone NameMSMg01-445M13
Chromosome8 (Build37)
Map Location 101,526,113 - 101,526,661
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445M13.T7 (MSMg01no445_m13.b1)MSMg01-445M13.TJ (MSMg01no445_m13.g1)
ACCAG534632AG534633
length7561,504
length of high quality
(start - end)		517 (36 - 552)---
definitionCHROMAT_FILE: MSMg01no445_m13.b1 PHD_FILE: MSMg01no445_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:06 2005CHROMAT_FILE: MSMg01no445_m13.g1 PHD_FILE: MSMg01no445_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAG
ATTGACTTCAAATCAGCTGGCTCATGAACAGTTGACTTTACTGAGTCATC
TCAGCTTCCAGGTCTTGCATTATTAAACAATCTGAGTGGTCTTCTTTGTG
GAATAATCCAATGTTAAAAAAAAAAATCCTTGTAGTGAAGGCACCTTGGG
CTAAGGTCTATTTCTGAAACAAGAATAACAGTAATAGAAATTTTCAAAAA
CCTCCTTATACTTAATTCCATCTAGTTGTGGAGACAGAAATACCTAAGTG
ACCTAAAATATACAAATGACTTCAGGTAAAATCTGGACAAGATCAATGGG
ACAATAATAGAGAAGAATAATAATAAGGCAGGCTTGGGTGAGATGGTAGA
TATGTTGAAATGTAAATGACAAGAGGGAACCAACCTTGGAAGAGTTTCCA
GACACTAGCCTGGAGGCAGGAACAAGTTCTGCCTATTTCAGGAACAAAAA
GAAAGTTTGTGGTTTTGGAAAGCCTCAGGGAAGAACAGCGGGAGGTAATG
TGAAGAAGGTGTTCTAACTTATGCATGAGCCGGTGGTGGGTTGATGTAAC
AGGGCTCCTTAATATGTTCCATGACCATGCAGGAATACAACTTGTGACTC
ACATTTTGGACGCGAGTTTTTATCTGAATGGGTATTCTTGATCCCTTCCA
AGAAAAAGTTCCCTTTCCAAATTTTGAAAAAXXXXXXXXXXXXXXXXXXX
GGATTN

CACAGTTATACAGAACATCTGTTTGTTTCCTCCCCGCCGTTTCCTCACTC
TACACGTTCGTGGGGCGTAGCCGCATGTGGATGTTTGTTCCCTCTCACCC
AAATGTTCTGTCTTGCNGTGACATCTAAACCTAACCCGTTTTGCCCCCGC
GCGCACCCCTCCTCCTCACTTAGTGGCTTGTTCTTGCCTCATGAGCGCGC
GTGTTGCGACGCCAGGCACCCAGGCGCGTATCGGGCTAATTTAGTACCAA
TTAGCACACCTCGCGTATNAGAGATTATATATCCACGACGGTGTCAGCGA
TCGGAGACAGNCGTCATTATTGCTCTCGCGCCACTCCGACGCTAATGTAT
TTCTGTAGCCGCGATCAGCCGCATCGCGCTGCGTATATTTCTGTTGTGCT
CTTGTGCATCGCTCTTCGTCCGAATATGACACGCGGCGGGTATTCGCCCT
TCTAATCTGCGTCACGCGTAATTAAGCGGACATGNATCGTTCGCGTGCTA
CGTCATGTTATGTAGTGTCACGCGGCGCGTCGCGACGGTGTCTGCGCAGG
TATTAGTGTGTTGTTTCGGGCATCGCCCTCNTATCGATTCGCGTTTATGT
CGCAGTTGTGCTCACTGAGTATTCTCTTGCTAGCTCTGTGCGTGCGTGCT
ATTCACCGCCGCCTCATTTGTCGCCCGCGTCACGTTCGACGCACACGATG
TATACTGCTGTTATTGAATCGCTCTTCACTCGTAGCTCACTGCGCGGGTA
TATAGTATTATGTGATCAGCTCTTACGGTCTGCTCGCCGTTATCTCTCAG
TTTTACTTTGTGATGTGTGTAGAGGGAATGAACCACTGTATATAGGAGAA
GAGGCACTGGACGGGTTCATATCAATATATGCAGNTGTAATTGTATGCGC
GTATTCGTATCGCGGTAGTCGCCATCGACTTATGAGCGAGACGAGACATA
CAGTATGCGCGAGTGCTCCAACGGTACAGCATCTTATGTAGACGCGTACG
GCTATNTAGAGCGTGCATCGGCTCGTTCGTCGCGCGTTGACTGATAGTGT
CGCTGATAATATGTGTTATACGNGCGCTATTGATGCTACGCCCGAATGCG
CGGACGCCGTGACGTGGTGCAGAGACGCACATTGTTGATCGCTCGGATAA
TGCAGTGCCCTGTCCGCGCGTTCACGACCGCGATCAGCTTATATNTGTAG
AGTCCTTACCGCGCAATAATGTCTTATATCGTAGTCCTACTACGACTCTA
TCTGTATCTATATGCCACGCCCTCGATTGACGGCGCGGAGCGGTGGANTG
ATGGCGGTCTTCGCGACGGGATTAGGCATGTGCTGCAGTCGCTGACAAGT
GTATATCCTGTCGTTTCTTGTGTCTCCACGGTCGTCTTCGTCGCGCGCGA
TGCTTCATCTATATATGCACGCCTAGTCAACGCGACAGATGTGTATGTTC
GGTACACCAGCGGTATACGTACTGTGTCGCGCAGAACATGAAGTGAGCTC
GTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_m13.b1 MSMg01no445_m13.b1 CHROMAT_FILE:
MSMg01no445_m13.b1 PHD_FILE: MSMg01no445_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:06 2005
         (517 letters)



>mm_chr8_101525942_101526861
          Length = 920

 Score =  804 bits (416), Expect = 0.0
 Identities = 500/550 (90%), Gaps = 38/550 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatagattgacttcaaatcagctggctcatgaacagttgacttt----actgag 60
           |||||||||||| ||| |||||||||||||||||||||||||||||||||    ||||||
Sbjct: 172 gaattccatagagtgaattcaaatcagctggctcatgaacagttgactttacccactgag 231

                                                                       
Query: 61  tcatctcagcttccaggtcttgcattattaaacaatctgagtggtcttctttgtggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcatctcagcttccaggtcttgcattattaaacaatctgagtggtcttctttgtggaata 291

                                                                       
Query: 121 atccaatgttaaa----------------------------aaaaa-aaatccttgtagt 151
           || |||| |||||                            ||||| |||||||||||||
Sbjct: 292 atgcaatattaaaacaaacaaacaaacaaacaaacaaaaacaaaaacaaatccttgtagt 351

                                                                       
Query: 152 gaaggcaccttgggctaaggtctatttctgaaacaagaataacagtaatagaaattttca 211
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 352 gaaggcaccttgggctgaggtctatttctgaaacaagaataacagtaatagaaaatttca 411

                                                                       
Query: 212 aaaacctccttatacttaattccatctagttgtggagacagaaatacctaagtgacctaa 271
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 412 aaaacctccttatacttaattccatctagttgtggagacagaaatacctaagtgacttaa 471

                                                                       
Query: 272 aatatacaaatgacttcaggtaaaatctggacaagatcaatgggacaataatagagaaga 331
           || | ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||
Sbjct: 472 aaca-acaaatgacttcaggtaaaatctagacaagatcaatggcacaataatagaggaga 530

                                                                       
Query: 332 ataataataaggcaggcttgggtgagatggtagatatgttgaaatgtaaatgacaagagg 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ataataataaggcaggcttgggtgagatggtagatatgttgaaatgtaaatgacaagagg 590

                                                                       
Query: 392 gaaccaaccttggaaga----gtttccagacactagcctggaggcaggaacaagttctgc 447
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaaccaaccttggaagacagagtttccagacactagcctggaggcaggaacaagttctgc 650

                                                                       
Query: 448 ctatttcaggaacaaaaagaaagtttgtggttttggaaagcctcagggaagaacagcggg 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 651 ctatttcaggaacaaaaagaaagtttgtggttttggaaagcctcagggaagaacagctgg 710

                     
Query: 508 aggtaatgtg 517
           ||||||||||
Sbjct: 711 aggtaatgtg 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 920
Length adjustment: 10
Effective length of query: 507
Effective length of database: 910
Effective search space:   461370
Effective search space used:   461370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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