Query= MSMg01no446_b16.b1 MSMg01no446_b16.b1 CHROMAT_FILE:
MSMg01no446_b16.b1 PHD_FILE: MSMg01no446_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:32 2005
(521 letters)
>mm_chr8_102271044_102271964
Length = 921
Score = 895 bits (463), Expect = 0.0
Identities = 509/529 (96%), Gaps = 8/529 (1%)
Strand = Plus / Minus
Query: 1 acaacaaatgtctaaaaaaccgagtccttgttctggtgtgatccttagctgttcatgaat 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 818 acaacaaatgtctaaaaaattgagtccttgttctggtgtgatccttagctgttcatgaag 759
Query: 61 cccagttctaactggtaccagttccttca--------gtgagtgtcttaggtatgataga 112
|||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 758 cccagttctatctggtaccagttccttcagtaatccggtgagtgtcttaggtatgataga 699
Query: 113 cgggatgaaaagaaagaattagtattcgagacttacagcagaggaatttggctcctggac 172
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 698 agggatgaaaagaaagaattagtatttgagacttatggcagaggaatttggctcctggac 639
Query: 173 ttaaattctgttacaaataatccctaggcatccatgcatgcctgtagatacggcacaaca 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttaaattctgttacaaataatccctaggcatccatgcatgcctgtagatacggcacaaca 579
Query: 233 ctttaatcgccattggttatggtcctaataaaaggtgggtaataaaatcagagtctgctg 292
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctttaatcgccattggctatggtcctaataaaaggtgggtaataaaatcagagtctgctg 519
Query: 293 ggctccatttttataggcaatatcaagccctgtgaactttaatgcccactgtctatttag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggctccatttttataggcaatatcaagccctgtgaactttaatgcccactgtctatttag 459
Query: 353 atagtcatggctcagagctggtattaaaagtagctagaaagacttgttctgaactattga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atagtcatggctcagagctggtattaaaagtagctagaaagacttgttctgaactattga 399
Query: 413 aatacattgcaaattacacagcagtatgggttagatagaactcaacctgcatagcactga 472
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aatacattgcaaattacactgcagtatgggttagatagaactcaacctgcatagcactga 339
Query: 473 ccctcgcgaaagcacttctgttttcctcagcaggttcttttctactcca 521
|||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 338 ccctcgcgaaagcagttctgtttttctcagcaggttcttttctactcca 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_b16.g1 MSMg01no446_b16.g1 CHROMAT_FILE:
MSMg01no446_b16.g1 PHD_FILE: MSMg01no446_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:32 2005
(238 letters)
>mm_chr8_102122749_102123386
Length = 638
Score = 375 bits (194), Expect = e-108
Identities = 234/262 (89%), Gaps = 24/262 (9%)
Strand = Plus / Plus
Query: 1 ataaacatattttggtatttgaacagaatcccagaacatattatctggaaatactcagga 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ataaacatattttgttatttgaacagaatcccagaacatattatctggaaatactcagga 236
Query: 61 atgagt-t-----------------------tatatatatatatacacacacatatgtaa 96
|||||| | |||||||||||||| | | ||||||||||
Sbjct: 237 atgagtatatatatatatatatatatatatatatatatatatatatatatacatatgtaa 296
Query: 97 tggccagaagaattagagaccctgaaaatccccattcatgaaaaccattaaaactttaga 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tggccagaagaattagagaccctgaaaatccccattcatgaaaaccattaaaactttaga 356
Query: 157 taataaaaagcaattgtcagatgtgactagaattcaaatatatatttaatagagtaaaaa 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 taataaaaagcaattgtcagatgtgactagaattcaaatatatatttaatagagtaaaaa 416
Query: 217 taatatttaatataataacaga 238
||||||||||||||||||||||
Sbjct: 417 taatatttaatataataacaga 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
