BAC Information

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BAC

Clone NameMSMg01-446B18
Chromosome8 (Build37)
Map Location 86,629,749 - 86,629,943
singlet/doubletsinglet
Overlap geneLOC100039920
Upstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552
Downstream genePodnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446B18.T7 (MSMg01no446_b18.b1)MSMg01-446B18.TJ (MSMg01no446_b18.g1)
ACCAG534882AG534883
length732802
length of high quality
(start - end)
249 (65 - 313)195 (134 - 328)
definitionCHROMAT_FILE: MSMg01no446_b18.b1 PHD_FILE: MSMg01no446_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:32 2005CHROMAT_FILE: MSMg01no446_b18.g1 PHD_FILE: MSMg01no446_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCTTGGA
ATTTCCCAGAGAGTATGTAAATGCTTAAGCCCTGATAGGCAACATGGGTT
GTAGACTGTTCCAGGGGGCTGGTTGGAGTATGAAAGATGCACGGTTCTCT
ATCTCTCCCCTCTGCCCTTTCTTTCCTATCTAGTGGCAGAAGGTGAAACC
AGGAGGATAAAGAATGGGGAAAGAAGAACCCACAAAGTAGCAAATATTGG
GTACAACTAGATAGTGACCCAATAGAGTGATTGAATAAACAGATGACCAC
AAAGAAAAATCTTCTTTTGAAGCAGAAGAAATAGACAGAAATTGGTATCA
GGAGTGGGGTGTTGCTATGATAGTTCTGTCATCCATGTATTTTTAGAAGG
ATTTTGGCGGCATTTCAACTTTGGGCTGGGAAAGCCATTGAGTTCTCAGA
ACTCAGTGGACTGTTTCTGTGGGACCTTGGGAGATAGTAATACTGAAAGC
AGTACAGATGATAGGAGTCTGGCTTGTGAAGTTTCAGAAGGAAGTTTTCA
AAGACTATTGGGGCCATTCAGCATTTTGAATTAAAAACCTGTGATCCGGT
CCTCTGGGGTTGAAGAATCAGCTGTGATTGACAAATATCCCAACCACTTA
TTGTTATCCCTTTGCCTGGGCTGGGAACACCCAATACCTGGTCTGGTGTC
GCTTTATGAATACGCTTGTCGATTTATCAACA
CTCTCCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGCCCAATTCCAGGTATGGGTAGAAAGG
CAGTTGGATGCAAAGTAGCTTTGTGATGCGGCGGAGGAGGAATATTCCAG
CAAAGACAAAGGTTTCTGGAGAGGTTCAAGACTAACCTGCCATGATGTAT
GGATTAGTGATGGGGACACTGCTGAGAGACTTACTAGGTGATCTCTTCTT
TATGCAAAGACTGGAGGGCTCACTAGCAGCCCCCCTCCCCCCAGCATGAG
GAGAAAATATGACCATGTTTGTGCAGACCCTTTCTTAGCTGAATCATAGA
CTAGCGTACCCAGAGCAGGAGGCAATGGAAGAGTAAGGATTCAGTGTGCG
CGTGTGCGTGTGTTTGCCCTTGCCGTTTCTCCTACCCTTTTTTCTCCCAT
TTTCTTTTTTTCACCTCCCTTTTTTCCCCCTCCTTTTTCTTATCCCCTTT
TTCCCTCCTTCTTTACCCCCTCCTTTCTCCTCTCTCCTTCCCTCCCCCCC
CCTCCGTCGTTTTTCTCTCTTTTCCCCTTTCCCCCTTTTTTCCTTTCCCC
CACCCCCCTCTTTTCCCCCTCCTTTATATCCCTTTTCACCCCCCCTCTTT
CTCTCCCTTCCTCCTCCACCGTTTTTCCTTCTACTCTCTCTCATCCCTTC
TTTTTACTATCCTATTCCCACCCTTCCCCCCGTTCCCTTCTATTTTTTTT
CCCTCACACATCTCTTCCTCCCTCTCCCCTTTACTCTTTTTATCTTGTTT
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_b18.g1 MSMg01no446_b18.g1 CHROMAT_FILE:
MSMg01no446_b18.g1 PHD_FILE: MSMg01no446_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:32 2005
         (195 letters)



>mm_chr8_86629549_86630143
          Length = 595

 Score =  362 bits (187), Expect = e-104
 Identities = 193/195 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggaggaatattccagcaaagacaaaggtttctggagaggttcaagactaacctgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggaggaatattccagcaaagacaaaggtttctggagaggttcaagactaacctgccat 260

                                                                       
Query: 61  gatgtatggattagtgatggggacactgctgagagacttactaggtgatctcttctttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtatggattagtgatggggacactgctgagagacttactaggtgatctcttctttat 320

                                                                       
Query: 121 gcaaagactggagggctcactagcagcccccctccccccagcatgaggagaaaatatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaagactggagggctcactagcagcccccctccccccagcatgaggagaaaatatgac 380

                          
Query: 181 catgtttgtgcagac 195
           ||||  |||||||||
Sbjct: 381 catgcatgtgcagac 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)