BAC Information

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BAC

Clone NameMSMg01-446C08
Chromosome8 (Build37)
Map Location 124,148,763 - 124,149,008
singlet/doubletsinglet
Overlap geneZcchc14
Upstream gene1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b
Downstream geneJph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446C08.T7 (MSMg01no446_c08.b1)MSMg01-446C08.TJ (MSMg01no446_c08.g1)
ACCAG534910AG534911
length778748
length of high quality
(start - end)
179 (67 - 245)246 (65 - 310)
definitionCHROMAT_FILE: MSMg01no446_c08.b1 PHD_FILE: MSMg01no446_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:35 2005CHROMAT_FILE: MSMg01no446_c08.g1 PHD_FILE: MSMg01no446_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTCACAAATTCCGAGCCGGGCGGNAATCNTCANC
ATTAGCCAAAACGAGAGCTTGCTTCAGCAAAAATTCCTTTCTTGCTTCAG
TTAAATATTTCTTCCTGAGTCTGCCTTAGCCTTTCACCTGTGGCCACTTC
AGGAAAACCCTCCCTCATGTGTTTGCCCCAACAAAACGCCATCCAACACA
ACTGACTTTCCAAAGAACCCTAAAGTTTCCACTTCATCAGTGTTATTTTT
TCTATGCTCTCTTAAGAAGAGGAAACCTTAATTGGAACAGCTCCCTCCAT
CAAACAGACCTTTTTCTGTTTTTTCCTGAGGCACNACCTTGACCGACAAT
TGATCTTGTGTCTTCCCCTCCACTGCCTGTAGTGTCAGTCCTGATTATGT
CTGAACTGTCCACCACATCTAGTTTTATTTCTGTAGATCCGTTTCACTTT
TTAACAGCATTGTCCACTCTTCCTGAGGCTCCAAGTTCTAATCTTAGCCC
CACAACGCCTGTTTCTTACTCACCCTGTTACGAATTTTCGCACTCCTCTT
TCCGTCCTGTTCCCTGTCATTTGTTTACATCCACTCTCCTTGCCTACATT
TACTCAATCTCTTTCATATAATAACTACCTTAACTTTTTCTTTACCCCTT
ATGACCCAACACCATAAAGTTCTCACCTTTTTTTATCTGACGTAAACCAC
CCTTGTTACCTCCACTATCATATATTTACTTACCTTAAACATTCATCCCA
CCGTCTTACTTCTCCCTTCTCTATTCCN
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTCCGAAATTCTGTCTGCATGCATCATGTCTGTAGTGACTGTGACAT
GTCTGCATGTATCATGTCTGTAGCGACTGTGACATGTCTGCATGCATCAT
GTCTGTAGTGACTGCACCATCAGGCAAGCGGAGGACCTAAGCCTGGGTAG
TGTTTGCTTCTGTGCCACTTCGCTTATAGCTTTGCTATATAACGTTATGG
TGAAGTGCAGCTAAAAGACTGAACTAACCGCCAGTCTTGCGCTTTTAACA
AAAACAAAACTCTTATTTACAAGCATGACTTTTAACAAGATAGGAGTTAA
TGATAAAAGCTAACTCGTGAAACCACAGCAGTGTGGTCTCTCCTGATCTG
CTCCGGGACCACAGTGATGAAAGAGTGAGAAGCCTCTGCGCTGGTGACAT
TCCTGGTTCCGCGTTTGTCCTTACTGTGATGACTGAGATCATACCTCATA
GTTTTGTACCGTGTGCCTCTTGCTTGTATCACACTTTTCCTGTCGTCATG
TCGCCCGATCCTTTTTTCCCCCTCTCCTTTTTAACACACTCCTTCCCTAC
AATCTCCCCTCTCTTTATTCCTTTCCGACTTATAACTCTCTCACATATCT
TATCTCTTTTTATTCTCCTTCATCTTCCCTCTTATTTTTCACTTTCCTAT
TATTCCTTACTTTCTCTCTTATCACTTCTACCCCTTTACTTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_c08.g1 MSMg01no446_c08.g1 CHROMAT_FILE:
MSMg01no446_c08.g1 PHD_FILE: MSMg01no446_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:35 2005
         (246 letters)



>mm_chr8_124148563_124149208
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctgcatgcatcatgtctgtagtgactgtgacatgtctgcatgtatcatgtctgtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtctgcatgcatcatgtctgtagtgactgtgacatgtctgcatgtatcatgtctgtagc 387

                                                                       
Query: 61  gactgtgacatgtctgcatgcatcatgtctgtagtgactgcaccatcaggcaagcggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gactgtgacatgtctgcatgcatcatgtctgtagtgactgcaccatcaggcaagcggagg 327

                                                                       
Query: 121 acctaagcctgggtagtgtttgcttctgtgccacttcgcttatagctttgctatataacg 180
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 326 acctaagcctgggcagtgtttgcttctgtgccacttcgcttatagctttgttatataacg 267

                                                                       
Query: 181 ttatggtgaagtgcagctaaaagactgaactaaccgccagtcttgcgcttttaacaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 266 ttatggtgaagtgcagctaaaagactgaactaaccgccagtcttgggcttttaacaaaaa 207

                 
Query: 241 caaaac 246
           ||||||
Sbjct: 206 caaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)