Query= MSMg01no446_d20.b1 MSMg01no446_d20.b1 CHROMAT_FILE:
MSMg01no446_d20.b1 PHD_FILE: MSMg01no446_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:42 2005
(589 letters)
>mm_chr8_88186054_88187042
Length = 989
Score = 967 bits (500), Expect = 0.0
Identities = 556/582 (95%), Gaps = 19/582 (3%)
Strand = Plus / Plus
Query: 9 gaattccccacttgttctcggcagctgagcagcaaacctctgggatctgcctgtctcccc 68
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gaattccccacttgagctgggcagctgagcagcaaacctctgggatctgcctgtctcccc 285
Query: 69 atttcctgcgctgatgttacagaagtgcacgctctaccacaaaggggcctgggttatgtg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atttcctgcgctgatgttacagaagtgcacgctctaccacaaaggggcctgggttatgtg 345
Query: 129 gatgctgggcatctgagctcagggcttcacgcctacacagtgagtactttattcactatg 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 346 gatgctgggcatctgagctcagggcttcacgcctacacagtgagtactttattcaccatg 405
Query: 189 ccaccttcccagaccctaaagtacataaacaaaacaaccacaagaccacacacaccacac 248
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 406 ccaccttcccagaccctaaagtacataaacaaaacaaccacaagac----cacaccacac 461
Query: 249 acacacacacacacacacacacacacacacacacacactctcacacaaaacccctacaaa 308
||||||||||||||||||||||||||||||| || | || |||||| || |||
Sbjct: 462 acacacacacacacacacacacacacacaca---ac-ccct---acaaaa----ta-aaa 509
Query: 309 -atgaaacaaaacaccccctcaaaaaccaacaagtgtttgatcaatacttacatttacca 367
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ca--aaacaaaacaccccctcaaaaaccaacaagtgtttgatcaatacttacatttacca 567
Query: 368 gttaggactccatagatttttaaaaccataatctttcaagattaagaatcttaatatgag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gttaggactccatagatttttaaaaccataatctttcaagattaagaatcttaatatgag 627
Query: 428 gttgatgagatggctcagcaagtaaaacaaacgtgctgtgcaatcccagtgacctgaatt 487
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 628 gttgatgagatggctcagcaagtaaaacaaacgtactgtgcaatcccagtgacctgaatt 687
Query: 488 cacccccacaaggagaaagtcaacgccatgaagttgtcctatgactctcacaggtgtgct 547
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 688 cacccccacaaggagaaagtcaatgccatgaagttgtcctatgactctcacaggtgtgct 747
Query: 548 gtgtgcctttgtgcattcacacacttaaaaatttaaaaagaa 589
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtgtgcctttgtgcattcacacacttaaaaatttaaaaagaa 789
Score = 83.9 bits (43), Expect = 3e-20
Identities = 46/47 (97%)
Strand = Plus / Minus
Query: 244 cacacacacacacacacacacacacacacacacacacacacactctc 290
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 123 cacacacacacacacacacacacacacacacacacacacaccctctc 77
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 244 cacacacacacacacacacacacacacacacacacacacacac 286
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cacacacacacacacacacacacacacacacacacacacacac 83
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 245 acacacacacacacacacacacacacacacacacacacacac 286
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 acacacacacacacacacacacacacacacacacacacacac 85
Score = 78.1 bits (40), Expect = 2e-18
Identities = 43/44 (97%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 236 acacacac-cacacacacacacacacacacacacacacacacac 278
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 126 acacacacacacacacacacacacacacacacacacacacacac 83
Score = 68.4 bits (35), Expect = 1e-15
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 235 cacacacac-cacacacacacacacacacacacacacac 272
||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 cacacacacacacacacacacacacacacacacacacac 83
Score = 68.4 bits (35), Expect = 1e-15
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 253 acacacacacacacacacacacacacacacacactctcacaca 295
|||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 126 acacacacacacacacacacacacacacacacacacacacaca 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 9
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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