BAC Information

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BAC

Clone NameMSMg01-446F17
Chromosome8 (Build37)
Map Location 105,366,608 - 105,366,912
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh11
Downstream geneEG667618, LOC100041368, 1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446F17.T7 (MSMg01no446_f17.b1)MSMg01-446F17.TJ (MSMg01no446_f17.g1)
ACCAG535072AG535073
length766979
length of high quality
(start - end)
321 (32 - 352)---
definitionCHROMAT_FILE: MSMg01no446_f17.b1 PHD_FILE: MSMg01no446_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:51 2005CHROMAT_FILE: MSMg01no446_f17.g1 PHD_FILE: MSMg01no446_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTCAGTATATT
TTCTATACTAATCCTTTATCAGAAATTGCCAGTATTTTCTTATGGTGTAT
TGCTTCTCTTTTGTATTTTATGGGGAAATTTTAAATATTTGATGAGGGTC
TATTTAAATTTTTATTTTGTGACTTATGATTTTAGTGTGAAGTCTAAATT
CCCTTTGATCTGATAATCTCTGCCCCTCTCTTTCTCTCTTTCTCTTTCTC
TTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTT
TCTCTCTTCTTCTCTATCTCTCTGACTCTCTGTCTGTCTGTCTCTTCCCT
AGAATATATGGCAGTCTCATATTTTGTCCTTTCAACATCTCATTTATACA
GCGCTTTGTAAAAGTTGTGGATCTCAGATCAAGATGCAACTGTTTTCTTT
ATAAACTTAACCTATTGCATTCTAAATACTACCTCAATTATGTTTTATAG
CTATACGTCTGTGTCTTGCTAAAATCTTTGGATATCCTGCATTGTTGCTC
TAACCTCTTTCCATGACCCAGGTCACCCAGATGCTGATTAGTATCTCGTC
TTTTTGGACCAGGCATCGTGAATTAATCCCCACTTCCTCTTTTTCAATTT
TTTCACCCATTTTTCATGTAACTCAAATTCTTTTTGCTTTCTAATCACTT
ATTTTTCAAACTAAAATCTGGTTTTTCCGCCCATTTATCACCTGGAGCGC
CCTTGCCTTTTTGAAA
ATAAAGCACTAGGATTTGTCTTCTCCTAATCGAAGAGAATACGGGTAGAT
TTCCCTCCCTAAAGGAATGTTTACCAGCAATAACTTACAGGGCAGTCCAC
TCCCGTGCTTTTTTTCCACACACTTTCAGCGGTGCAATACTTACGTATCA
AATGGAATTTTCTTCCCCGCCAATAACTTCCATGGTTATTCCCTTTTACC
TCAAAATACTCCTTCTTCATCCAATAGCCAAATAGTGTTTCGGATCCTAG
CGTAAATCCTGTGGGCGTCATAAATCGCCCCCTTTTCTTTCCTGGGCCGC
CCTTTCCAACGTATGATACCCACTCGTATTATACAATGACCCGCGCTTCT
TATCCCTCACCCCTATCTCCCATTAAATCCTCTCCGATCGTAATATCTCT
CCCCAGTTGTTACATATAACGATTTCTCGATACCGGAGCAATTTTATCTC
TCTTACTCCTGATATTTATCACCCACCGCTATACACCCACCCCGATTGCG
ATAATACCATCCCTATGACGTGTTTCGATCATCAATTTATACAAACGCCC
ATCGTCATACCAATCATTATCCGATACATTCAACTGTTCATTCCGCAATA
CCCATTTATTACTCCCTTACCAACACTGACCGTCCATATTCACTTAACGC
TCACCCACTCATCTATTCTTCGCGTTTGTTTTTCCCGCACCTCATCTACA
CACACTCCATTTTCTATGTCACCCCCCAATAAAATCCTTACATCGTCGTC
TTCTCCCCTCTATCTACCATTTCATAATATCGTCAAACCTTCTCTATTCT
CCTCATCCATTCCCGCCTCTTAATCCACCATCCCCACTACTCCTATAGTA
TTCGCGTGCAATTTTGTATGTCACCACGTCTTCCTTATACTGCATGTGCC
GCTCACTTCAGTTAACCACCTATATGCACTCTCCTATATCTCATAATCCA
CTCGCACTCACAATTTCCCCAATTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_f17.b1 MSMg01no446_f17.b1 CHROMAT_FILE:
MSMg01no446_f17.b1 PHD_FILE: MSMg01no446_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:51 2005
         (321 letters)



>mm_chr8_105366406_105367126
          Length = 721

 Score =  524 bits (271), Expect = e-153
 Identities = 302/319 (94%), Gaps = 14/319 (4%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctcagtatattttctatactaatcctttatcagaaattgccagtattttcttat 62
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctcagtatattttatatattaatcctttatcagaaattgccagtattttcttat 262

                                                                       
Query: 63  ggtgtattgcttctcttttgtattttatggggaaattttaaatatttgatgagggtctat 122
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggtgtattgtttctcttttgtattttatggggaaattttaaatatttgatgagggtctat 322

                                                                       
Query: 123 ttaaatttttattttgtgacttatgattttagtgtgaagtctaaattccctttgatctga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaaatttttattttgtgacttatgattttagtgtgaagtctaaattccctttgatctga 382

                                                                       
Query: 183 taatctctgcccctctctttctctctttctctttctctttctctttctctttctctttct 242
           |||||||||||        |||||||||||||||||||||    ||||||||||||||||
Sbjct: 383 taatctctgcc--------tctctctttctctttctcttt----ttctctttctctttct 430

                                                                       
Query: 243 ctttctctttctctttctctttctctttctctcttcttctctatctctctgactctctgt 302
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 431 ctttctctttctctttctctttctctttctct-ttct-ctctatctctctgactctctgt 488

                              
Query: 303 ctgtctgtctcttccctag 321
           |||||||||||||||||||
Sbjct: 489 ctgtctgtctcttccctag 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)