BAC Information

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BAC

Clone NameMSMg01-446K23
Chromosome8 (Build37)
Map Location 83,012,199 - 83,012,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
Downstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K23.T7 (MSMg01no446_k23.b1)MSMg01-446K23.TJ (MSMg01no446_k23.g1)
ACCAG535321AG535322
length693759
length of high quality
(start - end)
57 (110 - 166)190 (327 - 516)
definitionCHROMAT_FILE: MSMg01no446_k23.b1 PHD_FILE: MSMg01no446_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:17 2005CHROMAT_FILE: MSMg01no446_k23.g1 PHD_FILE: MSMg01no446_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTAAACGACTACTATATTCCGAGGTGGGGGAATTCTTGAGAAT
TCCAACACAAAGTCAAATCCTTAATCATCAGGGAAATTTTATTGACACGC
CTGACATTCACCTCACACCACCAGAATGGCTAAGNCCAAAATTCAGGTGA
CAGCAGATGCTATCATGAGGGGAGAAACAGAAACCCCTCATTGCCGATGG
GATCCAGCTTGACACCACTCTGGATTTATTTGGACGCTTTCTGATTTTGC
TGTTGTTGACNGNAACACCAGCANACCNCNCCTTATATATACCCANAANA
NGNCCAACTGGNAAAAGGACACATGCTCCACTACGCCATAGCANCCNTAT
TTATAATAACCAGAANCTGGAAAGAACCCAGAAGNCCCTCAACAAAGGAA
GGGACACAGAAAACGGGCNATATTTACACAAGGCAACAACACNCACCTAC
NAAAAACAACGAACTNACGAAANTCCCACGCAAACGGACGGACCTGGAGG
CCATCATCCCGAACGAACCAACCCAANCACAAAACAACACACACGAAANG
CACCCACTGAAAACCGCACATTAACCCACAAACCNAAAACACACCACAAA
CAACTCGCAAAACACACGAAACTCAACAAAAAAGAAGCCCAAACCGCGGA
AACCCCACACCCCCCCAACAATGGGTATAAATTATTTTTGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGCGAGAATTACAGGAAGCAATTGCACTTGTAGAGAAAGACCATG
AGTTTCCTTCAGACTTGCTGAATTTGAAGTTTCTTTGAAGCACACCAATG
AAGGATGAAGAATGAAGATGGATTTGGTACTTAGAAGACTAATCTAGACT
GGGGTAGACATGTGACCATTACCCATCATCCACATGTGGCATGTACAAGG
GTGCCTGCTACTCTCATGAACAAGTTATCTTCTCAGTGATGAACAAAGCT
TAGTAGATCTCTATGCTNCATCATAGGAACTGAAGTCATGGGATGGCCTT
GGTTATAGCAACAAAGAAGTCCTTGGTTTCTCTAGCTTCCAGTTGCAGCC
TTCTGAAGGATGTTCTGTGCTCAGCATCTGTCTCCTATTTGGGAGTACTT
TTCCTCAGGCTCAGTGATGGATCCCAAGGAGTTATATACTTTATTATGTG
ACAAATACTTCTGGGTTTGGCTGCTTGGCACATCTACAGGCATCCCATAC
AACCCAAGCTTGTCTGTTTTCCTTTGAAGAAACAAAGAAAGGGAAGTCAG
AAGCCCCCCTATAATGATGATGGGGCTCTCTAAAGCATTGCCCCACCCCC
AGCAATTATTCTGTTACTCCTGGCCTTCCTGGCGGCCGGGTAGAAACCCT
GGGGGTGCTTAAAAACTTCTTGCGAAAGAGGTGTTGGCGAAGCCTTTAAT
CCCCAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k23.g1 MSMg01no446_k23.g1 CHROMAT_FILE:
MSMg01no446_k23.g1 PHD_FILE: MSMg01no446_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:17 2005
         (190 letters)



>mm_chr8_83011999_83012588
          Length = 590

 Score =  360 bits (186), Expect = e-104
 Identities = 189/190 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaactgaagtcatgggatggccttggttatagcaacaaagaagtccttggtttctctagc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 390 gaactgaagtcatgggatggccttggtaatagcaacaaagaagtccttggtttctctagc 331

                                                                       
Query: 61  ttccagttgcagccttctgaaggatgttctgtgctcagcatctgtctcctatttgggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttccagttgcagccttctgaaggatgttctgtgctcagcatctgtctcctatttgggagt 271

                                                                       
Query: 121 acttttcctcaggctcagtgatggatcccaaggagttatatactttattatgtgacaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acttttcctcaggctcagtgatggatcccaaggagttatatactttattatgtgacaaat 211

                     
Query: 181 acttctgggt 190
           ||||||||||
Sbjct: 210 acttctgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)