Query= MSMg01no446_m16.b1 MSMg01no446_m16.b1 CHROMAT_FILE:
MSMg01no446_m16.b1 PHD_FILE: MSMg01no446_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:25 2005
(244 letters)
>mm_chr8_81321062_81321704
Length = 643
Score = 418 bits (216), Expect = e-121
Identities = 237/244 (97%), Gaps = 1/244 (0%)
Strand = Plus / Minus
Query: 1 agtctcgcacacttgttttctagtctggagtatgctgttctgtagtacagcgtgagaaat 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 agtctcgcacacttgttttctagtctggagtatgctgtgctgtagtacagcgtgagaaat 384
Query: 61 gcaatcaacttagtaggcaagagtctacactaaaaagattaaatagaaaaaaaaaatccc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 gcaatcaacttagtaggcaagagtctacactaaaaagattaaatag-aaaaaaaaatccc 325
Query: 121 tgttcaaatggaggaatttttagtgtttttgtgttaggctcatgtttcaggtggtggttg 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 tgttcaaatggaggaatttttagtgtttttgtgttaggctcatgtttcagatggtggttg 265
Query: 181 aaaacttgagagccgctgtgtccttctccgttgcttcctcaataggcactgtgacaagga 240
||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||
Sbjct: 264 aaaacttgagagccgctgtgtgcttctccgttgcttccttaataggcactgtggcaaaga 205
Query: 241 agcc 244
||||
Sbjct: 204 agcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no446_m16.g1 MSMg01no446_m16.g1 CHROMAT_FILE:
MSMg01no446_m16.g1 PHD_FILE: MSMg01no446_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:25 2005
(278 letters)
>mm_chr8_81149408_81150085
Length = 678
Score = 497 bits (257), Expect = e-145
Identities = 272/283 (96%), Gaps = 11/283 (3%)
Strand = Plus / Plus
Query: 1 gattcccttactcaggagattttgaaactgtttaaatttagtaagtctactatgcctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattcccttactcaggagattttgaaactgtttaaatttagtaagtctactatgcctgtg 260
Query: 61 tgccatagctactctctgaaattatagaaattagaataacaatttctacttttatgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccatagctactctctgaaattatagaaattagaataacaatttctacttttatgcttc 320
Query: 121 tgtaagtaaatattttattctttcattaaagtgttaataaagtttaaaagggaaagtata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaagtaaatattttattctttcattaaagtgttaataaagtttaaaagggaaagtata 380
Query: 181 ggaaaactg-----tttttttataataatcataatggtagctgggcagtggtggcacaca 235
||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaactgcacaat------ataataatcataatggtagctgggcagtggtggcacaca 434
Query: 236 cttttaatcccagcacttgggaggcagaggcaggtggatttct 278
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttttaatcccagcacttgggaggcagaggcaggtggatttct 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
