BAC Information

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BAC

Clone NameMSMg01-447C05
Chromosome8 (Build37)
Map Location 70,785,007 - 70,893,481
singlet/doubletdoublet
Overlap geneSh2d4a, LOC665510, 4732435N03Rik
Upstream geneNat1, Nat2, LOC100041265, Nat3, Psd3
Downstream geneInts10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447C05.T7 (MSMg01no447_c05.b1)MSMg01-447C05.TJ (MSMg01no447_c05.g1)
ACCAG535667AG535668
length762781
length of high quality
(start - end)
250 (73 - 322)280 (74 - 353)
definitionCHROMAT_FILE: MSMg01no447_c05.b1 PHD_FILE: MSMg01no447_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:53 2005CHROMAT_FILE: MSMg01no447_c05.g1 PHD_FILE: MSMg01no447_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,893,233 - 70,893,481)(70,785,007 - 70,785,286)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCGGAA
TTCTAGGGGCAATTTCAAACTACAGAAATTAGNATACCGGAGACAGAATG
TGTAGGTAGCAAGACACCATAAAATAAAAAGTAATGGCTGGAGGTGGATA
AATTAGGAGAGATTTCCTCCTGAGGTTGCATTTTGACTCAGTCTAGAAAG
AGACTGTGGATATTCGCAAATCCTTGATAGCCTCCCCTGGAACACATCAG
TACCTCTTATGAGACAGGCAATGAATGTTCAGAATGGGGCTGTAATAAAA
GTTACTTACCTATGCAAACAATATTATTTCCTTTCCCAACAGCCCGCAAA
CAAAACCTCCTGCTCAATGTCGCAGTTAAGAGTTTTCACCGTTATCAGCC
CTGTCATTTTCTGTTTTGCCTGCAGATGAAAGCAAGGATTTTTGTGTGTG
TACAGATGACTTTCTTTTTAAACTTCTGCATACGAGTCGTTAGTAATAAG
TGACACTGTGGGATTTCATACTAATATTTAATGTTTTGAATTTTAAGCCA
TGAGATGAAATTTGCTGGCGCTTTAATGCAAAAACATCGTGCTCATTAAG
GTATGACTGTCATTTAAATGAGTGTTTCTCTTTATACATTCCAACTTGCT
GGATCTGACTGACAGTTCTGGTCTATGATCCCCAATGAACCACCCACCTT
CTTCTATCTTTAATATTCCAACCCTCCCTCTCCTCTGTGTCTGGCCTTAC
CTTTTCCCTTGN
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGAACCATGAAGGGTGAAAGACTTGG
ATGGGAGACATAGCCTGAGCTATGAGGATGAGGAGACTCTTAGTTGGTGA
GTGGTGATTACCACTACAGGCTCGATCTTGAATCGCTGATACCCTTACTT
TGTCTAGAGTATTTCTAGAACTAAAAGTGACACTTCTATGAGACTCCTGC
ATTTGTTCAACTCACTTCATTTATTCATCTTCCTCAGTAAAAAGCTACTC
CTGGATATGATCAATATCCTCTTATATCATGTCCAATACAAATATAAGTG
CCATAGGCTTACATAGCTAAAGAATATATGGTAGAATATCTAACTTGTCT
GTCTTATACTTTTAATTCCTTCAGCTGGGATATTGAATCCTTTTTCTTTA
TTGCCCCTTGCTACTCTACATTCCCTTCTAATGTACTTATGCTCAATAAC
CAATATGTCTTTTGATTTGTATCCCATTTTCTTTTTGGTCTTCATCTGGT
TTCCCTAATCTTCGGATCACATCTTCGTCTTTGATTCCGCCTTTTGCTCC
CTGCATCTCTTCCCTCTACCTGTATTCGTCTCTTTGTTCATTCTTCTTAT
ACTTGTTCTCTTTGTCTCCTCTTCCTACCTACTTCTCCCTCCCCCTTCCT
TTTCCCCCTCCTTTTTTCTTTTTACTTTTATTCCATCTTCGTTACTTCTG
TTTTTTCTTTTCCTTCCTTCCTCTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_c05.b1 MSMg01no447_c05.b1 CHROMAT_FILE:
MSMg01no447_c05.b1 PHD_FILE: MSMg01no447_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:53 2005
         (250 letters)



>mm_chr8_70893033_70893682
          Length = 650

 Score =  453 bits (234), Expect = e-132
 Identities = 245/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaattagnataccggagacagaatgtgtaggtagcaagacaccataaaataaaaagt 60
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cagaaattagtataccagagacagaatgtgtaggtagcaagacaccataaaataaaaagt 390

                                                                       
Query: 61  aatggctggaggtggataaattaggagagatttcctcctgaggttgcattttgactcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aatggctggaggtggataaattaggagagatttcctcctgaggttgcattttgactcagt 330

                                                                       
Query: 121 ctagaaagagactgtggatattcgcaaatccttgatagcctcccctggaacacatcagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctagaaagagactgtggatattcgcaaatccttgatagcctcccctggaacacatcagta 270

                                                                       
Query: 181 cctcttatgagacaggcaatgaatgttcagaatggggctgtaataaaagttacttaccta 240
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cctcggatgagacaggcaatgaatgttcagaatggggctgtaataaaagttacttaccta 210

                    
Query: 241 tgcaaacaa 249
           |||||||||
Sbjct: 209 tgcaaacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no447_c05.g1 MSMg01no447_c05.g1 CHROMAT_FILE:
MSMg01no447_c05.g1 PHD_FILE: MSMg01no447_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:53 2005
         (280 letters)



>mm_chr8_70784807_70785486
          Length = 680

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaccatgaagggtgaaagacttggatgggagacatagcctgagctatgaggatgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaccatgaagggtgaaagacttggatgggagacatagcctgagctatgaggatgagg 260

                                                                       
Query: 61  agactcttagttggtgagtggtgattaccactacaggctcgatcttgaatcgctgatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactcttagttggtgagtggtgattaccactacaggctcgatcttgaatcgctgatacc 320

                                                                       
Query: 121 cttactttgtctagagtatttctagaactaaaagtgacacttctatgagactcctgcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttactttgtctagagtatttctagaactaaaagtgacacttctatgagactcctgcatt 380

                                                                       
Query: 181 tgttcaactcacttcatttattcatcttcctcagtaaaaagctactcctggatatgatca 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tgttcaactcacttcatttattcatcttcctcagtaaaaggctactcctggatatgatca 440

                                                   
Query: 241 atatcctcttatatcatgtccaatacaaatataagtgcca 280
           ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 441 atatcctcttaaagcatgtccaatacaaatataagtgcca 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)