BAC Information

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BAC

Clone NameMSMg01-447E11
Chromosome8 (Build37)
Map Location 25,430,450 - 25,431,048
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrp1, LOC100040931, Zmat4
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447E11.T7 (MSMg01no447_e11.b1)MSMg01-447E11.TJ (MSMg01no447_e11.g1)
ACCAG535774AG535775
length766766
length of high quality
(start - end)
655 (46 - 700)475 (76 - 550)
definitionCHROMAT_FILE: MSMg01no447_e11.b1 PHD_FILE: MSMg01no447_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:07 2005CHROMAT_FILE: MSMg01no447_e11.g1 PHD_FILE: MSMg01no447_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCTTTAGTCTTTCTATCGATCTTTGTGTCTCTCCCTTGCCTATAACAC
ATTATCTTGACTACAGCTATATAATAAGTCAGCCAGCGTGAGTCTTGAAA
CTCTCTGTTTTTTTTTCTTTATCTTCTCAGAATTATCTTATTTTTTCTAG
TTCATGGGAGTTCTGTGTAAATTTTAGGATCAGTTTAAGAGAAAAAGCCT
GATAGATTTTGGGAGTTGCATAGAATATGTAAGTAAATCAATTACAATGA
ACATGATTCCTGTGATCTGATTGCAGCTTGGGTCCTGGAACTGAGTCTGC
ATTTCTTCCAAAGGCGCTGCATGGCTTTTAATGAGCCCTATAAATATTTT
ATTAAATTTATCTTTATTTCATAGTATTGCACGATGTTCAATTTTTAAAT
GTTACTGAGAGTATGTAGAAATGAAATTGAGTTTTACATATTATCCTAGT
ATCTGGAAATCTTGAACTAATAGCTAAAATGGGCTTGCAAATTGAATTCA
AGATTATAAAAATGAGTAATAATGATATAGTGGGTCACACCTGTGGTCCC
AGAATTCAAGAGGTTTGGGGCAGGAAGATCTGAAACCCAAGGCCAACCTC
AGCTACACAGCAAGTTTGAGGTCAGCCTGGGCTATGTAAAACTTTACCTC
AATTAATCAAATAAGCAAACAAATAAATAAATAATTGGAATCTGATAAGG
TAGGATTCACTTCAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGAAAGGCTG
AGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCAGTTCCTCCGAATATTGGACATAGTACTACAGGAGGATCC
AGCAATACCTCTCCTGAGCATATATCCAGAAGATGTCCCAACCGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTGTAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAGT
TTATGAAATTCTTATGCAAATGGATGGACCTGGAGGGCATCATTCTGAGC
GAGGTAACCCAATCTCTGAATAACTCAAATGATATGTACTCACTGAATAG
TGGATATTTACCCAGATACTTAGAATATCCACGATACCTTATACTATTTG
GAAAACTCTTGATAGGCAAGAGGAAACATGATGAATATGTGGTATATTTT
GTCCTTCTTTAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_e11.b1 MSMg01no447_e11.b1 CHROMAT_FILE:
MSMg01no447_e11.b1 PHD_FILE: MSMg01no447_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:07 2005
         (655 letters)



>mm_chr8_25429994_25431048
          Length = 1055

 Score = 1089 bits (563), Expect = 0.0
 Identities = 590/599 (98%)
 Strand = Plus / Minus

                                                                        
Query: 52   acacattatcttgactacagctatataataagtcagccagcgtgagtcttgaaactctct 111
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1055 acacattatcttgactacagctatataataagtcagccagtgtgagtcttgaaactctct 996

                                                                        
Query: 112  gtttttttttctttatcttctcagaattatcttattttttctagttcatgggagttctgt 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 995  gtttttttttctttatcttctcagaattatcttattttttctagttcatgggatttctgt 936

                                                                        
Query: 172  gtaaattttaggatcagtttaagagaaaaagcctgatagattttgggagttgcatagaat 231
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 935  gtaaattttaggatcagtttaagagaaaaagcctgatggattttgggagttgcatagaat 876

                                                                        
Query: 232  atgtaagtaaatcaattacaatgaacatgattcctgtgatctgattgcagcttgggtcct 291
            ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 875  atgtaagtaaatcaattacaatgaacatgattcctgtgatctgaacgcagcttgggtcct 816

                                                                        
Query: 292  ggaactgagtctgcatttcttccaaaggcgctgcatggcttttaatgagccctataaata 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  ggaactgagtctgcatttcttccaaaggcgctgcatggcttttaatgagccctataaata 756

                                                                        
Query: 352  ttttattaaatttatctttatttcatagtattgcacgatgttcaatttttaaatgttact 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  ttttattaaatttatctttatttcatagtattgcacgatgttcaatttttaaatgttact 696

                                                                        
Query: 412  gagagtatgtagaaatgaaattgagttttacatattatcctagtatctggaaatcttgaa 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  gagagtatgtagaaatgaaattgagttttacatattatcctagtatctggaaatcttgaa 636

                                                                        
Query: 472  ctaatagctaaaatgggcttgcaaattgaattcaagattataaaaatgagtaataatgat 531
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 635  ctaatagctaaaatgggcttgcaaattgaagtcaagattataaaaatgagtaataatgat 576

                                                                        
Query: 532  atagtgggtcacacctgtggtcccagaattcaagaggtttggggcaggaagatctgaaac 591
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 575  atagtgggtcacacctgtgatcccagaattcaagaggtttggggcaggaagatctgaaat 516

                                                                       
Query: 592  ccaaggccaacctcagctacacagcaagtttgaggtcagcctgggctatgtaaaacttt 650
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 515  ccaaggccaacctcagctacacagcaagtttgaggtcagcctgggctacgtaaaacttt 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)