BAC Information

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BAC

Clone NameMSMg01-447F02
Chromosome8 (Build37)
Map Location 102,551,588 - 102,786,389
singlet/doubletdoublet
Overlap geneLOC100042069, LOC436054, LOC100042078
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447F02.T7 (MSMg01no447_f02.b1)MSMg01-447F02.TJ (MSMg01no447_f02.g1)
ACCAG535803AG535804
length728742
length of high quality
(start - end)		486 (76 - 561)443 (83 - 525)
definitionCHROMAT_FILE: MSMg01no447_f02.b1 PHD_FILE: MSMg01no447_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:10 2005CHROMAT_FILE: MSMg01no447_f02.g1 PHD_FILE: MSMg01no447_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,785,990 - 102,786,389)(102,551,588 - 102,552,030)
sequence
NTTTACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCACACTTCCCAAACTCACTGCCCCTGGAGCCTTCCT
TTATCCCATTCTTACATGTTCACTGCTGACCAAGGTAACTTCCCCTCTTT
AACTGAATCACTAATGGCAAATTGTTTACCTTACTATCACAACTGGTAGA
TTAAAAAGTAGCTTTGAAATAGAAAAGTACTAAGTACACAAGCCCGAGTC
ATTACACTTCAAGGCAAAACCTTTCTGCATTTTGAAGATTTTAGACATAA
TGTTGCATCAATATTACAGAGAAATTTTGTATAACCTTCACCCAGTTTCT
TTTCTAAATATCTATAGAATAATCGAGGTAATCAACCTTGAGACTGAAAT
TGTAAGTCAAGTGTTTTATTTGAGGTTATACCAACTTATGATTTTGACAC
AAAACACCACAGAGGCTATGATCACACCATAATGTGGAAGACCAGATAAA
TGTTCATGCATATTATTGATTATGTTGAATTTGTTGAACTATGTATAATC
AGATGAAAACCCAATTATAGTGGTCCATCAAGAACTATCAGTGTATGAAA
CATTGAAAGTAACAATTTTCTGTTCCCAACATATTTTGAAAATCAATGAA
ACTCTTCACAAAAGCTTTAAAAAAATGCTTCCCTTGACATTCTTACAAAC
TAGAATCCAACCAAAGTCTAGTATTAAA

ATTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAAACAAGTGGGCCA
AAGAAGGTGGTAACAGCAATAATTCTTACCACTGGTCAAGCATACAAATG
CTCATGTATTGCATTGATTATTTTTCAGGACCTCAAAGAGTCATTCTGTT
TTAGAGACCTACTTAGCTACCTATTGAAGAATGGAGACTCAAATTTGTAA
ATATGAACTCTGATTTTGGTGTTCTTAATTATCAATGACCACTAATTTCC
TATAACACAAATGGGTTCATAGTGTTGCCTTTGGCTAAAGTATCTTGGTG
AAGATCAGCCCTAAACTTTAAGCATAGACCAGTAGATACATGAGGGTTCT
CTGTAGATATTAACCATTTTAGTTGTCTCCGTGCTGCTTATCGATTTATC
TACTGTGTTCATCAGCGCTCCTGTATTTTCAAGTTTTCTAAAGGTGATTT
ATTTTTATGAATGAGATTTTATCTTAGTAAAACTGATAACAAGCTAGCTA
AAAAGCCTTTCCTTTGCAAAGCAGCGATCTCGCTTTAACTAATACAAGTA
GTATTGAGAGCTACCAGACCGGGCTCGGTGAAATTAATCTAAATCTCCTC
CCATTAAAGAATCCTACTTTGTTTTCTAGAAGAGATATCTATTGGTTTAT
TCCTTCCTCTTTCTATTTGGGTTTCTGGCGCACATTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_f02.b1 MSMg01no447_f02.b1 CHROMAT_FILE:
MSMg01no447_f02.b1 PHD_FILE: MSMg01no447_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:10 2005
         (486 letters)



>mm_chr8_102785504_102786389
          Length = 886

 Score =  727 bits (376), Expect = 0.0
 Identities = 394/400 (98%)
 Strand = Plus / Minus

                                                                       
Query: 87  taatggcaaattgtttaccttactatcacaactggtagattaaaaagtagctttgaaata 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 taatggcaaattgtttaccttactatcacaactggtagattaaaaagtagctttgaaata 827

                                                                       
Query: 147 gaaaagtactaagtacacaagcccgagtcattacacttcaaggcaaaacctttctgcatt 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gaaaagtactaagtacacaagcccgagtcattacacttcaaggcaaaacctttctgcatt 767

                                                                       
Query: 207 ttgaagattttagacataatgttgcatcaatattacagagaaattttgtataaccttcac 266
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttgaagattttagacacaatgttgcatcaatattacagagaaattttgtataaccttcac 707

                                                                       
Query: 267 ccagtttcttttctaaatatctatagaataatcgaggtaatcaaccttgagactgaaatt 326
           |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 706 ccagtttcttttctaaatatctatagaataattgagataatcaaccttgagactgagatt 647

                                                                       
Query: 327 gtaagtcaagtgttttatttgaggttataccaacttatgattttgacacaaaacaccaca 386
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 646 gtaactcaagtgttttatttgaggttttaccaacttatgattttgacacaaaacaccaca 587

                                                                       
Query: 387 gaggctatgatcacaccataatgtggaagaccagataaatgttcatgcatattattgatt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gaggctatgatcacaccataatgtggaagaccagataaatgttcatgcatattattgatt 527

                                                   
Query: 447 atgttgaatttgttgaactatgtataatcagatgaaaacc 486
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atgttgaatttgttgaactatgtataatcagatgaaaacc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no447_f02.g1 MSMg01no447_f02.g1 CHROMAT_FILE:
MSMg01no447_f02.g1 PHD_FILE: MSMg01no447_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:10 2005
         (443 letters)



>mm_chr8_102551388_102552230
          Length = 843

 Score =  833 bits (431), Expect = 0.0
 Identities = 440/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaaacaagtgggccaaagaaggtggtaacagcaataattcttaccactggtcaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaaacaagtgggccaaagaaggtggtaacagcaataattcttaccactggtcaagca 260

                                                                       
Query: 61  tacaaatgctcatgtattgcattgattatttttcaggacctcaaagagtcattctgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaatgctcatgtattgcattgattatttttcaggacctcaaagagtcattctgtttt 320

                                                                       
Query: 121 agagacctacttagctacctattgaagaatggagactcaaatttgtaaatatgaactctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagacctacttagctacctattgaagaatggagactcaaatttgtaaatatgaactctg 380

                                                                       
Query: 181 attttggtgttcttaattatcaatgaccactaatttcctataacacaaatgggttcatag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 attttggtgttcttaattatcaatgaccactaatttcctataacacgaatgggttcatag 440

                                                                       
Query: 241 tgttgcctttggctaaagtatcttggtgaagatcagccctaaactttaagcatagaccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tgttgcctttggctaaagtatcttggtgaagatcagccctaaactttaagcatggaccag 500

                                                                       
Query: 301 tagatacatgagggttctctgtagatattaaccattttagttgtctccgtgctgcttatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatacatgagggttctctgtagatattaaccattttagttgtctccgtgctgcttatc 560

                                                                       
Query: 361 gatttatctactgtgttcatcagcgctcctgtattttcaagttttctaaaggtgatttat 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gatttatctactgtgttcatcagcgctcctgtattttcaagtttcctaaaggtgatttat 620

                                  
Query: 421 ttttatgaatgagattttatctt 443
           |||||||||||||||||||||||
Sbjct: 621 ttttatgaatgagattttatctt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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