Query= MSMg01no447_g19.b1 MSMg01no447_g19.b1 CHROMAT_FILE:
MSMg01no447_g19.b1 PHD_FILE: MSMg01no447_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:19 2005
(567 letters)
>mm_chr8_63264386_63265352
Length = 967
Score = 998 bits (516), Expect = 0.0
Identities = 552/564 (97%), Gaps = 2/564 (0%)
Strand = Plus / Minus
Query: 6 gaattctctccac-ttgccaggagtcactgggtgcctagaaccatctaagaagcatgtgt 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gaattctctccacaatgacaggagtcactgggtgcctagaaccatctaagaagcatgtgt 849
Query: 65 ttgat-ggactccagtgagactggggaggactagctgttctctccagactagcacttcct 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ttgatgggactccagtgagactggggaggactagctgttctctccagactagcacttcct 789
Query: 124 atcagcagtgtactcaatctttgtgtggccctgcctctcccaaacataattccatactgg 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 788 atcagcagtgtactcaatctttgtgtggccctgcctctcccaaacataattctatactgg 729
Query: 184 aaattgaaccccagggtctctggaacagcagccagtgctcttaagctttgaactatctct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaattgaaccccagggtctctggaacagcagccagtgctcttaagctttgaactatctct 669
Query: 244 ctacccacaacataactttttaaccagccaaatgtaaagtgtgcacactgagcctttgtt 303
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctacccacaatataattttttaaccagccaaatgtaaagtgtgcacactgagcctttgtt 609
Query: 304 gcaaaatatttcccagtatatgatacctttcaccatgaaaaagatgcttggcatcttctc 363
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gcaaaatatttcccagtagatgatacctttcaccatgaaaaagatgcttggcatcttctc 549
Query: 364 ttctcatgactcgatgctcaaggtgagagtactgcagttttctgatctatagattctatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttctcatgactcgatgctcaaggtgagagtactgcagttttctgatctatagattctatt 489
Query: 424 aaaatctgtcatgtgtataatcactttttgtcactttattccaaaccatggatgaactta 483
||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 488 aaaatctttcatttgtataatcactttttgtcactttattccaagccatggatgaactta 429
Query: 484 gttttcaggcctctttttcctcccttttaatgtggacatgctgtagtttcattctttctc 543
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gttttcaggcctccttttcctcccttttaatgtggacatgctgtagtttcattctttctc 369
Query: 544 tcatgaccttgactgtcttgaagg 567
||||||||||||||||||||||||
Sbjct: 368 tcatgaccttgactgtcttgaagg 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_g19.g1 MSMg01no447_g19.g1 CHROMAT_FILE:
MSMg01no447_g19.g1 PHD_FILE: MSMg01no447_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:19 2005
(469 letters)
>mm_chr8_63201143_63202012
Length = 870
Score = 893 bits (462), Expect = 0.0
Identities = 468/470 (99%), Gaps = 1/470 (0%)
Strand = Plus / Plus
Query: 1 aaaaaaatacaagagaggtagctgagggtaaattgagacattccataattatctaaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaatacaagagaggtagctgagggtaaattgagacattccataattatctaaggta 260
Query: 61 attcttcctatcaaaaccagatcaagggtcatttagtaaatgcctataagtagtaatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcttcctatcaaaaccagatcaagggtcatttagtaaatgcctataagtagtaatgtc 320
Query: 121 ttagagaaggctttggatgctcctgtgtaaaaggctcccatgaaagctattcaaaatcta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ttagagaaggctttggatgctcctgtgtaaaaggctcccatgaaagctattcaatatcta 380
Query: 181 gtctgaacctcttcagattgaaagcaaataacttctcagcacgtggcctctaacattctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgaacctcttcagattgaaagcaaataacttctcagcacgtggcctctaacattctt 440
Query: 241 ctaatcacttttaccaggggtcatcctaagagcaggcatagttagatccatgtttattac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatcacttttaccaggggtcatcctaagagcaggcatagttagatccatgtttattac 500
Query: 301 acatgtttatcatccatgagtggaacccattttccctccctcctaaaagatgaccagatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgtttatcatccatgagtggaacccattttccctccctcctaaaagatgaccagatc 560
Query: 361 cttaaatgggagagaatatcgtcccagatctccttcagctcctcgtatttctgttgtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaaatgggagagaatatcgtcccagatctccttcagctcctcgtatttctgttgtccc 620
Query: 421 tttctgaagcttctggactctatccatccgagaattc-aaatatgtacag 469
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 tttctgaagcttctggactctatccatccgagaattccaaatatgtacag 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space: 394740
Effective search space used: 394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
