BAC Information

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BAC

Clone NameMSMg01-447O01
Chromosome8 (Build37)
Map Location 38,944,734 - 38,944,982
singlet/doubletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447O01.T7 (MSMg01no447_o01.b1)MSMg01-447O01.TJ (MSMg01no447_o01.g1)
ACCAG536225AG536226
length747784
length of high quality
(start - end)
249 (77 - 325)462 (77 - 538)
definitionCHROMAT_FILE: MSMg01no447_o01.b1 PHD_FILE: MSMg01no447_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:55 2005CHROMAT_FILE: MSMg01no447_o01.g1 PHD_FILE: MSMg01no447_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATACATGTACCGAATACACTTACATCACTTTCAACATC
ATCCACCAAATTCCTCCAATGTGCCCTCAATCTCTTGTGAATTCATGGCC
TCTTCTATAATGACTATTATACAGAGAGGCATGTATATATGTATATGTGT
CTTAGAGTTTTATTGCTGTGAACAGAAACCATGACCAAGTCAAGTCTTAA
AAAGAACAATATTTAATTGGGGCTGGCTTACAGGTTCAAAGGTCCAGGAT
CCTCAAGGCAGGAACACAGCAGAATTTTTTTTGCATGGTGCAGGAGGCTC
TTGTCTTAGAGATAATTCATTCTCTCTTTCTCCAAAGGTATTAAATATCC
TGTAGATTTTCAGTTATATGTGCAGCCTCGTGAAATCTCCCTACAAATTG
TGGACATGTGAATTGATGAAGTCATTATGCATGTCAGGTGCACACAGTCA
TATTGTTGAAATGTCATGAATGCAATAGTTCTGTCATGTGTATAACACTC
AACCTTCCCCACCTGTGTGTAATGAGACCTTGCTATTTTATTTTCCAATC
TGATATCATATGTTTGATATCCTTGTGGATGTTTACTTAAGACCTATGAA
TTTTCTCTGATGAGTTGGTTGTCTCCGGACTTTCTTCCTTTTTTTAACAG
AAACGCGTTTAGCACTTAATTGTTATTTTTCTAAAATTACCTCGCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTCACCCCA
TAAAAACCCCTAGCTTTCGAGCCTCGTGGCTGGCATCCGTTATCTCTTGT
GTGGGATACATGTCGGTCCGGAGCTCCATAATTAAACGTCCTCATGTAAT
TACAACAAGATGGGTCCTCGTGTTTCTTTGGGTGCTCTCACACTCCTGAG
ACTAGAGTGGGGGTCCCTGAAAGGGGGTCTTACAAAAGTAGAAGGCAGAA
GAAGAGAGGAAAAAGTGAAGCACAATGAATCAGGAGAGACAGCAGAACAT
AGCAAAATATAACACAGCATAAGAGAGACAAAGAAGCTGTAGAGAGAGGA
GAAAAAGTAGGTAGGCTTGTCCTTACCATGGGATGGAACAGGTTCTTTGT
AACAGCAAGGCAGGCTTAGTTTTACTAAAGAGAACAACTAAAAGGCTTTT
TTTCTTAAAGACTTTTCCTTGCATTTAACAACAACAACAAAAGGGGGGGG
GCAGGAACTTGTTTTTCCTCTATGCACTAAAGCTTGAAATTTCTTTTTCA
TCCCCAATGAGTGAGATCTTTCTGTAATGTCCCCTTGGTTTTTTGGCCCC
TTTGTTTTTACCTCTTATCTTAGTTTATGTCTGTGTTATCTATTGGACAA
GACTTTATTCCTCCTTTTTTGATTTTTTCCTTCATCTTATCGTTTATTCC
TATTCCTTCTTCTTTACTTTCTTCCCCTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_o01.b1 MSMg01no447_o01.b1 CHROMAT_FILE:
MSMg01no447_o01.b1 PHD_FILE: MSMg01no447_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:55 2005
         (249 letters)



>mm_chr8_38944658_38945306
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacacttacatcactttcaacatcatccaccaaattcctccaatgtgccctcaatctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacacttacatcactttcaacatcatccaccaaattcctccaatgtgccctcaatctctt 266

                                                                       
Query: 61  gtgaattcatggcctcttctataatgactattatacagagaggcatgtatatatgtatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgaattcatggcctcttctataatgactattatacagagaggcatgtatatatgtatat 206

                                                                       
Query: 121 gtgtcttagagttttattgctgtgaacagaaaccatgaccaagtcaagtcttaaaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtgtcttagagttttattgctgtgaacagaaaccatgaccaagtcaagtcttaaaaagaa 146

                                                                       
Query: 181 caatatttaattggggctggcttacaggttcaaaggtccaggatcctcaaggcaggaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 caatatttaattggggctggcttacaggttcaaaggtccaggatcctcaaggcaggaaca 86

                    
Query: 241 cagcagaat 249
           |||||||||
Sbjct: 85  cagcagaat 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)