BAC Information

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BAC

Clone NameMSMg01-448H22
Chromosome8 (Build37)
Map Location 81,540,475 - 81,705,675
singlet/doubletdoublet
Overlap geneD630040G17Rik
Upstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346
Downstream gene1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448H22.T7 (MSMg01no448_h22.b1)MSMg01-448H22.TJ (MSMg01no448_h22.g1)
ACCAG536695AG536696
length767751
length of high quality
(start - end)		424 (53 - 476)375 (79 - 453)
definitionCHROMAT_FILE: MSMg01no448_h22.b1 PHD_FILE: MSMg01no448_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:47 2005CHROMAT_FILE: MSMg01no448_h22.g1 PHD_FILE: MSMg01no448_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,705,258 - 81,705,675)(81,540,475 - 81,540,849)
sequence
TCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAG
GATCCGCGGAATTCATTAAATATTCTCAAAAGGACAGAAACTGAAAGGCC
TGAAGCATTTACCACCTGGATGTATGGAAACTCTGGCTTGCAGCACCAAG
ACTTATAAATGTTATCTCTTTCTGATAGCAGCTGCTGCCCGAGAGACTTC
TAATATATTAGACAGAAACCTCTTTAATGTGTTTCCCTTGTGGCTTCTGT
CCTCCCAGCTAGTCTGGAAGCTCTGGCGGCTCAGAGGGAACATGGACTAC
CCTGTGCATCCCGTGGTACTGAGGATGTGTGTTTTGTCTTGCTTAACTGT
GAGCGTGAAGTTTCCATCGAGGACAGGTGATGCCAAGCTAATGTCTTCCT
GAGGTGAGTGGTGGAGAGACGTTCAGGGAAACACTGGGTTGAAGAAGGTT
TCACAAGTCAGTGTTTAACAGACAGGCAAAAGAAAGAATTGCAAAGTCTA
GTGGGAAACAGAGAGGCTGGTCTTTCCCTCCATTAACCATCCCAGAAATG
CCGAATTTAATTTGTCTTCCCTGGGGGGCTCCCAGCTCACCTACTTTCTC
AGATGGTTAATGCGGGTATTAGCAAAAACACCCACTTGCAAAATTGGGCC
CTTCTTCCTCCCCCCTAAAGAATCCCTCGGGGTTGTCCCCTTGCCAAAAC
TGGCCCCCCTTTTTTGACCATAAACAACCCTTTTTTTATTTGTTTGCCCT
CCCCCTACCCTCAATGN

AATTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTCTGCTTTGGCATGCTTG
CATCCTGATTACTTCTGGAGATGATTTATCTTTCATTAACATGGTTGACA
TCTACCTGGGAGTTCACACTTGCCCTTCAGGAAACTGGGAGCAAGACTTC
CTGGGGAGAGCACTCCAAGATCGAGATCACTCCTTTCTTATGAAAGAAAA
GCTGGAGTCTCCTGACCTTTAGGGTATAAGGCTGGTTGCTCTGTCCCTCT
GCCTGATTGATTTGAGAGAATGTCTAAGTCTGGAAGAGTGGTTAACAAAT
GCCTTACCCTGGATGATCTAACTGTGCAGCCCTGTCTAAAGCCGTGCCTC
AGATTCCCCGGCCATGAAGTGAACAATGAAATGGTCACGGCAGCGGACAT
GACGACAAAATTGTCTGTACTTATACCCAGTTTGGCCCGTGGCTTTTGTC
ATTTCCTGTACCCTCAGACACAAAATCTGCTGAAACACTCGTTTCCCAGA
TACTTTTATAAGGGGGCCACTTCTCCCAGAAGGGGGAAAAAGTTCCCTTG
GTGGGTTGGTTTTTAAAAGAAAAAGAAAACCCCCACCAAAGGTTTTTTTT
TTTCTATAAAAATTTTTTCTCACCAAGGTGGAGTTCCCTTATTGTCTCCC
CCTCCAACAGTGACCTTGTTATTAAATAACTCTTGTGCCCCCGTGTGGTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_h22.b1 MSMg01no448_h22.b1 CHROMAT_FILE:
MSMg01no448_h22.b1 PHD_FILE: MSMg01no448_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:47 2005
         (424 letters)



>mm_chr8_81705052_81705875
          Length = 824

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcattaaatattctcaaaaggacagaaactgaaaggcctgaagcatttaccacctg 66
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaattcattaaatataataaaaaggacagaaactgaaaggcctgaagcatttaccacctg 565

                                                                       
Query: 67  gatgtatggaaactctggcttgcagcaccaagacttataaatgttatctctttctgatag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatgtatggaaactctggcttgcagcaccaagacttataaatgttatctctttctgatag 505

                                                                       
Query: 127 cagctgctgcccgagagacttctaatatattagacagaaacctctttaatgtgtttccct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagctgctgcccgagagacttctaatatattagacagaaacctctttaatgtgtttccct 445

                                                                       
Query: 187 tgtggcttctgtcctcccagctagtctggaagctctggcggctcagagggaacatggact 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtggcttctgtcctcccagctagtctggaagctctggcggctcagagggaacatggact 385

                                                                       
Query: 247 accctgtgcatcccgtggtactgaggatgtgtgttttgtcttgcttaactgtgagcgtga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 accctgtgcatcccgtggtactgaggatgtgtgttttgtcttgcttaactgtgagcgtga 325

                                                                       
Query: 307 agtttccatcgaggacaggtgatgccaagctaatgtcttcctgaggtgagtggtggagag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtttccatcgaggacaggtgatgccaagctaatgtcttcctgaggtgagtggtggagag 265

                                                                     
Query: 367 acgttcagggaaacactgggttgaagaaggtttcacaagtcagtgtttaacagacagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acgttcagggaaacactgggttgaagaaggtttcacaagtcagtgtttaacagacagg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no448_h22.g1 MSMg01no448_h22.g1 CHROMAT_FILE:
MSMg01no448_h22.g1 PHD_FILE: MSMg01no448_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:47 2005
         (375 letters)



>mm_chr8_81540275_81541049
          Length = 775

 Score =  717 bits (371), Expect = 0.0
 Identities = 374/375 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtctgctttggcatgcttgcatcctgattacttctggagatgatttatctttcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtctgctttggcatgcttgcatcctgattacttctggagatgatttatctttcatta 260

                                                                       
Query: 61  acatggttgacatctacctgggagttcacacttgcccttcaggaaactgggagcaagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggttgacatctacctgggagttcacacttgcccttcaggaaactgggagcaagact 320

                                                                       
Query: 121 tcctggggagagcactccaagatcgagatcactcctttcttatgaaagaaaagctggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctggggagagcactccaagatcgagatcactcctttcttatgaaagaaaagctggagt 380

                                                                       
Query: 181 ctcctgacctttagggtataaggctggttgctctgtccctctgcctgattgatttgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctgacctttagggtataaggctggttgctctgtccctctgcctgattgatttgagag 440

                                                                       
Query: 241 aatgtctaagtctggaagagtggttaacaaatgccttaccctggatgatctaactgtgca 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggctaagtctggaagagtggttaacaaatgccttaccctggatgatctaactgtgca 500

                                                                       
Query: 301 gccctgtctaaagccgtgcctcagattccccggccatgaagtgaacaatgaaatggtcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccctgtctaaagccgtgcctcagattccccggccatgaagtgaacaatgaaatggtcac 560

                          
Query: 361 ggcagcggacatgac 375
           |||||||||||||||
Sbjct: 561 ggcagcggacatgac 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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