BAC Information

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BAC

Clone NameMSMg01-448I16
Chromosome8 (Build37)
Map Location 76,751,851 - 76,752,095
singlet/doubletsinglet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448I16.T7 (MSMg01no448_i16.b1)MSMg01-448I16.TJ (MSMg01no448_i16.g1)
ACCAG536730AG536731
length791767
length of high quality
(start - end)
245 (73 - 317)244 (79 - 322)
definitionCHROMAT_FILE: MSMg01no448_i16.b1 PHD_FILE: MSMg01no448_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:51 2005CHROMAT_FILE: MSMg01no448_i16.g1 PHD_FILE: MSMg01no448_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGG
AATTCCATAGAGTCACACTTTGCCTTTCAGGCCTTTTTCCCTGAATCTCA
GGGACCTCATACAGAGTAGAAAATGAATTAGTATTTGTTGCTCAACGGTA
AAAAAAATCTTTTAAAGAAAAGCAAATTTGTAATTTCATTGATCAAAGAA
ACATGCATGCTTCTCGTAGCCATGGGGAAAGTATTTAATCTATTTATGTC
TCCATATTCCCATCTACAGTGTGGGATTGATCAGAATAATGACTTTATTG
GTTTGCTACGGTACTATTCTTTTCTTGAGAAAGTCTGTGCTGTGTTGTTA
CATGGTTATGAATGATATACTCCACTCTCAGAAAATGTTCTTGCTTTATA
GATAAATCATAAGACAACTTGATTTTAGAAGACTACTCTCCGTGTAATAC
CTAAGAAAATCATCGACATGTTCCATCACTACTTTTCTTTCTTCTTGCCT
CAATCTCCTCCTCTTGCCCCCCTCCCGCCCGATTCTTTCCCTTTCTCATT
TTTTCCTTCCCCCCCGATTTCACCCCTTTGTCTCTATCCCCCATTCCCCC
CCACCCCCCTTATTCCCTTTATCCCCCATTTTTTTAATCCTTTCGTCCCC
CCTCTGTCTTTTTTTTTGTCGCTACCAATTTTCTTCCCTTCGACACAAGC
AATTTTAATATCTATTTATCCCACCTTTTTTATTTTTCCCATCCCCCGCC
ATTTTCACTCTAACTTATTTATTTTACTTTTTCCCGCACTN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACGGAATGG
CTGCGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCAGAGAAATG
CAAATCAAAACAACCCTGAGATTCCATCTCACACTAGTCAGAATGGCTAA
GATAAAAAATTCAGGTGAAAGTAGATACTGGTGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGACAGTTCCTCTTATTTTTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTA
AGAAGGACAACTATGAGAGGTATTGCTCAACTATGTTCATAGCAGCTTTA
TTTATAATAGCCAAAAACTGGAAAGTATTCAGATGTCCTTTCACAGAGGA
ATGGGTACCACAAAATGTGGGACCATTTCTCCAATGGAAACTACTCTGGT
TCTTCAAACAACGAGTTTTTGTTATTCCTACGCCGAGGGGGGGACGCGGC
GGGCTCACCCCCCCCCGCCGTTTCGCGATCCGTCGGTGCTTTCCTTTGGT
GCGGCCTTCTCTTTGTGGTGTCGCGGCCCCATTGCGCTTTCGTCGCTTAT
TTCCGCGTATTGGTAGGGCCGGCGCCAGGGTAGATACCTGATGAAATGGT
CGCTGTTGTGCGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_i16.b1 MSMg01no448_i16.b1 CHROMAT_FILE:
MSMg01no448_i16.b1 PHD_FILE: MSMg01no448_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:51 2005
         (245 letters)



>mm_chr8_76751651_76752296
          Length = 646

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttcaggcctttttccctgaatctcagggacctcatacagagtagaaaatgaattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttcaggcctttttccctgaatctcagggacctcatacagagtagaaaatgaattagt 260

                                                                       
Query: 61  atttgttgctcaacggtaaaaaaaa-tcttttaaagaaaagcaaatttgtaatttcattg 119
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgttgctcaacgggaaaaaaaaatcttttaaagaaaagcaaatttgtaatttcattg 320

                                                                       
Query: 120 atcaaagaaacatgcatgcttctcgtagccatggggaaagtatttaatctatttatgtct 179
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atcaaagaaacatgcatgcttctcgtagccatggggaaagtatttaatttatttatgtct 380

                                                                       
Query: 180 ccatattcccatctacagtgtgggattgatcagaataatgactttattggtttgctacgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatattcccatctacagtgtgggattgatcagaataatgactttattggtttgctacgg 440

                
Query: 240 tacta 244
           |||||
Sbjct: 441 tacta 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)