BAC Information

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BAC

Clone NameMSMg01-448O19
Chromosome8 (Build37)
Map Location 118,132,791 - 118,133,180
singlet/doubletsinglet
Overlap genenone
Upstream geneWwox
Downstream geneMaf, LOC384868, LOC668233, Dynlrb2, Cdyl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448O19.T7 (MSMg01no448_o19.b1)MSMg01-448O19.TJ (MSMg01no448_o19.g1)
ACCAG537022AG537023
length738762
length of high quality
(start - end)
390 (59 - 448)423 (83 - 505)
definitionCHROMAT_FILE: MSMg01no448_o19.b1 PHD_FILE: MSMg01no448_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:22 2005CHROMAT_FILE: MSMg01no448_o19.g1 PHD_FILE: MSMg01no448_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCANAGATCCGCGGAATTCCTATT
ATTACCAACAGTGACAGAACAAAAGGGTTCACTATGAGATCTTGTTGCTG
CTGTGGGTGGTGGTTACACCCTAGAAGACACACTCTGTGAAATGTCTCTC
TTGACTCAAGCAGAGTATAACCAACATACATAGATGCTGCCCTCTCTGTC
CTCAACTTCCCCCCTCCATCTTTCCCCTGTTCTTGAGCATTTGTCAGTGT
TTCCAGAGGACTCTGCAATGGGGCCAGATCTAGTAGAAGAGGTACTAATT
GCTGATAGCTATTATTCTGTGAACATCATAACCCACCAGCTAACAGGTAT
GCTTTGGTGTAGCTTGTACTTCCCTCTGCTCAGTAGACTTTCAGGTTATG
TGGAGTGTCAGCAAGACTTCTCTCTCTATATATACATATATACAAGGGTA
GACCAGTAGTCCAAACTACTATGGCTGCTTCTCAAGGCAGCTTCCTTCCT
CTTTTCAAGTCCCTCTGTCTATGAATCTGCCACCCAGCCCGTTGCTCTCC
TCGTGATGCTGTATGCCATCAAATATGACCTGTACCCCAAGACCGATTTA
TTCCTGTCCAGGCTGAATATTTTTTGAAATCCGTCTCTTACTATTTTGCT
CTTTTCCCCGCTGTACTCTCACAAATGAATCAAATCTCCCTTGAACATAT
TAAACTGCGGTTCCTCAGTCTTTCTCCTCCCCCTTCCC
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACACC
TGAAAAAAAAATGTTAAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAATCCTGAGATTCCATCTCACATCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCAAGGATATGGAGAAAGAGGAACACCCC
TCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC
TGGCAGTTTCTCAGAAAATTGGACATAGTACTACCAGAGGATCCCGCAAT
ACCTCTCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACAC
ATGCCCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTAGTAC
ATTTACAGAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTGCCAAATGGATGGACCTGGAGGGCATCACCCTGAGTGAGGGAAC
CCAACCCAAAGGAACTCTCCCAATATGGTATCCCTGGGAAGGGGAATTTA
CCCCGCAAACTTTGTAAACCCCCGATAAAAAAACAATTTTGTTTACCCCT
GAACCTCAAAAAAAGGAAAAAAAGTGGGGACCCTTTTTGTTTTTTGAGGA
TCCGCGAAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_o19.b1 MSMg01no448_o19.b1 CHROMAT_FILE:
MSMg01no448_o19.b1 PHD_FILE: MSMg01no448_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:22 2005
         (390 letters)



>mm_chr8_118132591_118133380
          Length = 790

 Score =  731 bits (378), Expect = 0.0
 Identities = 387/390 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgacagaacaaaagggttcactatgagatcttgttgctgctgtgggtggtggttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgacagaacaaaagggttcactatgagatcttgttgctgctgtgggtggtggttaca 260

                                                                       
Query: 61  ccctagaagacacactctgtgaaatgtctctcttgactcaagcagagtataaccaacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctagaagacacactctgtgaaatgtctctcttgactcaagcagagtataaccaacata 320

                                                                       
Query: 121 catagatgctgccctctctgtcctcaacttcccccctccatctttcccctgttcttgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagatgctgccctctctgtcctcaacttcccccctccatctttcccctgttcttgagc 380

                                                                       
Query: 181 atttgtcagtgtttccagaggactctgcaatggggccagatctagtagaagaggtactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgtcagtgtttccagaggactctgcaatggggccagatctagtagaagaggtactaa 440

                                                                       
Query: 241 ttgctgatagctattattctgtgaacatcataacccaccagctaacaggtatgctttggt 300
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctgagagcaattattctgtgaacatcataacccaccagctaacaggtatgctttggt 500

                                                                       
Query: 301 gtagcttgtacttccctctgctcagtagactttcaggttatgtggagtgtcagcaagact 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagcttgtacctccctctgctcagtagactttcaggttatgtggagtgtcagcaagact 560

                                         
Query: 361 tctctctctatatatacatatatacaaggg 390
           ||||||||||||||||||||||||||||||
Sbjct: 561 tctctctctatatatacatatatacaaggg 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)