BAC Information

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BAC

Clone NameMSMg01-449D07
Chromosome8 (Build37)
Map Location 104,587,162 - 104,587,408
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449D07.T7 (MSMg01no449_d07.b1)MSMg01-449D07.TJ (MSMg01no449_d07.g1)
ACCAG537235AG537236
length739751
length of high quality
(start - end)
616 (76 - 691)247 (80 - 326)
definitionCHROMAT_FILE: MSMg01no449_d07.b1 PHD_FILE: MSMg01no449_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:45 2005CHROMAT_FILE: MSMg01no449_d07.g1 PHD_FILE: MSMg01no449_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXTATATCCAGAAATCCG
CGGAATTCCTTGTTCTAACCGCAGTTGGTTATTGCAGAATATTGATATTT
GACCTATTACATACCATCATTTTAAATAAAATTGATACTCATCCTAAAAA
TAAGTTAAAAATTGCTTATATGCATGCTTTTGTTTGTTTCTTCTATAAAT
TCATGCATGCATCACATTTACTGTATTTAATAACAACCCATCTATGGGGA
AAAGGTATATGTGAATTAGATCACGTTTATTCTTTTGAGTTTCCGCCTGA
TTCAGCACAGATAATTTATGTGCTGTTTATGTTGTTTTAAAATGTTAAAG
ATTGCCTAAAAAAGACCTCTTAAGACAATGCCATGCTAGATTTGTATCCC
AGGTAGATTATAAATCTTATACAAAAATAATTGGCCATATAATCTCATTC
TTTACATCATCAAAATAGTAATGGCTTGAGATAATAATTTGGTATTTTAA
ATAAATAAGTAAGTAAATAAATAAATAAATGTGCATGTCTTTGTAAAGAT
TTGCTCTCAGTGTCCTCAGTTTCTACCTGTTCCACACATTAGTGTTAATT
CTCGAGGACCTATACTTAATTAATTATTACAAATGNATACTCATTTTTGA
TTTTAGAAAAATAAAATATGCACATGTGACTATTGATACCTAAAAGTCTT
TCTAAAAAGTATAGTTAGTCATTGCCTGTGTTGATTCTT
NNCCCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAAATTCAGAAGGAATGATCACACAAGA
AAATAGACAAATTTCCATGGAAAGAAATGGCTGTGGTTGTGTTTCAGAGT
AACTGTTTAAAACATTCAAGGCCCTGGGTTTTATTTAACTCCAAAGCTGC
AAACAAACTGATAACAACAACAAAAAACAAACATAAAAGTAGTTTGAGCA
CAAAGAAGCACAGAGTTATTGAGGAAAAAAAAAACTACCAAAATCTTTAG
ACTACAAAATTGTCATGCCATGTCAGCTTCTCTATAGCAAGTATAATCTA
AAACAGAAATCTATAAGCTGTGTAGTTTCATGAGGATTGCATCCCCTAAG
GAGATAGGAGCTCCACAGGAAGCCTTAGAGAATCATCTAACCTGGCTGTT
TGAGGCTCTCAGAGACTGAACCACCAACAAAAGAACTTACATGTAATTGA
CCTAGGTCCCCTGCACATATGTAGCAGATGTACAGCTTGGTCTTCATATG
GGTCCTGAACAACTGGAGTAGGGCCTATCCCCAAAGCTCTTGCCTGTATG
TGGGATATGTACTTTCAGCTGTGATATGGACTTTCTTGTTTGTCCTCGAT
GAGAGCAGATGAGCCTAGACTCACAAAATTTTGAAGCTCCCGGGGCTAGG
AGATACCCAGGGATCTCCCACCTGCTCACAAGTAGAATGAAGTGGCCTAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_d07.g1 MSMg01no449_d07.g1 CHROMAT_FILE:
MSMg01no449_d07.g1 PHD_FILE: MSMg01no449_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:45 2005
         (247 letters)



>mm_chr8_104586962_104587608
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaggaatgatcacacaagaaaatagacaaatttccatggaaagaaatggctgtggttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agaaggaatgatcacacaagaaaatagacaaatttccatggaaagaaatggctgtggttg 388

                                                                       
Query: 61  tgtttcagagtaactgtttaaaacattcaaggccctgggttttatttaactccaaagctg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 tgtttcagagtaactgtttaaaacattcaaggccctgggtttcatttaactccaaagctg 328

                                                                       
Query: 121 caaacaaactgataacaacaacaaaaaacaaacataaaagtagtttgagcacaaagaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caaacaaactgataacaacaacaaaaaacaaacataaaagtagtttgagcacaaagaagc 268

                                                                       
Query: 181 acagagttattgaggaaaaaaaaaactaccaaaatctttagactacaaaattgtcatgcc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acagagttattgagggaaaaaaaaactaccaaaatctttagactacaaaattgtcatgcc 208

                  
Query: 241 atgtcag 247
           |||||||
Sbjct: 207 atgtcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)