BAC Information

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BAC

Clone NameMSMg01-449F14
Chromosome8 (Build37)
Map Location 65,382,032 - 65,382,387
singlet/doubletsinglet
Overlap genenone
Upstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneSpock3, LOC384831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449F14.T7 (MSMg01no449_f14.b1)MSMg01-449F14.TJ (MSMg01no449_f14.g1)
ACCAG537343AG537344
length737748
length of high quality
(start - end)
491 (75 - 565)356 (335 - 690)
definitionCHROMAT_FILE: MSMg01no449_f14.b1 PHD_FILE: MSMg01no449_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:57 2005CHROMAT_FILE: MSMg01no449_f14.g1 PHD_FILE: MSMg01no449_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGCGGAATTCTCACCTGTTACCTACCAAATGGCTGAGAAGCACCTGATAA
AATGTTCAGCTTCTTTCTTACTCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGG
TGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGAAAGCTTGTACAACCACTCTGGAATTCAGTCTGGCAG
TTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCACAATACCTCT
CCTGGGCTTATATCCAGAAGATGTTCCAACAGGTAAGAAGTACACATGCT
CCACTATGGTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCTGCTCAACAGAGGATTGGATACAGAAAATGTGGTACATTTA
TACAATGGAGTACTAATCAGCTATTAAAAATAAAGAATTTATGAAATTCC
TAGGCAAATGGATGGACCTGGAGGGTATCTTCCTGAGGGAGGCAAGCCAA
TCTCAAAAGAACTCATGTGATATGTACTCACTGATAAGTGGATATTAGCC
CAGATACTTATAATACCCAATATATAAGATACAATTTGGTGAACACTTGT
AAACTCCCGAAGAACAAAGACCTTAGTGTGGAATCTT
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAAAAAATCAAACAAAT
TCATTATTACGTAAGCATGACCGTGGTTTGCTCTGAGAGTTGAGGATTGA
CTGGAGGTGGGTGTCAGCAGTCTTTGGAGAGCTCAAAATTTCTTGATGGA
AACCATGACTGCATGGTGTGTGCATTTATTAAAACTCACCAAACATTTTA
CATTCTTTAGATTCCAATAAATATTTGTAACTGAGGGAACTGCTTCTCCA
CTTAAAAAAATAGAACCGTTGTTCATTTTTCTTAGAGCAGCTTCAGAAAG
AGAGAAAGAGAAGCAGTAGAGAGAAGAATACATTATTATAGGAAAATAAA
ACTTTGAAAATGAGTCAAGGCTAGTAAAGTCAGGATAGATTTGAAAGATA
TTTCAAAGGAAGAGAAAACCCTTTTCATGTGAGGAACAACAGAAGAAAAT
AAAAAAATTGAGTTTTGATCTCATCGGTAACAGTAGAAATAATAATAACC
CAACAAAACTGGTGAATAAACAAGAATGGCTAGAAAAATAAAAAAAAAGT
AGTACAAACAAGCCTGCGACTCTTCCTTTCTGCTTTGAATGCTGCTGAGG
AAACTATATGAAGGTATTGAGTAAAGAAATATCCTAGGTCAGTGGGACAT
ACCAGATCATCCAGTAATACATTCTCAAACCTAGTCAACTAATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_f14.g1 MSMg01no449_f14.g1 CHROMAT_FILE:
MSMg01no449_f14.g1 PHD_FILE: MSMg01no449_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:57 2005
         (356 letters)



>mm_chr8_65381832_65382587
          Length = 756

 Score =  681 bits (352), Expect = 0.0
 Identities = 355/356 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcagcttcagaaagagagaaagagaagcagtagagagaagaatacattattataggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcagcttcagaaagagagaaagagaagcagtagagagaagaatacattattataggaa 260

                                                                       
Query: 61  aataaaactttgaaaatgagtcaaggctagtaaagtcaggatagatttgaaagatatttc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aataaaactttgaaaatgagtcaaggctagtaaagtcaggatagatttgagagatatttc 320

                                                                       
Query: 121 aaaggaagagaaaacccttttcatgtgaggaacaacagaagaaaataaaaaaattgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggaagagaaaacccttttcatgtgaggaacaacagaagaaaataaaaaaattgagtt 380

                                                                       
Query: 181 ttgatctcatcggtaacagtagaaataataataacccaacaaaactggtgaataaacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatctcatcggtaacagtagaaataataataacccaacaaaactggtgaataaacaag 440

                                                                       
Query: 241 aatggctagaaaaataaaaaaaaagtagtacaaacaagcctgcgactcttcctttctgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggctagaaaaataaaaaaaaagtagtacaaacaagcctgcgactcttcctttctgct 500

                                                                   
Query: 301 ttgaatgctgctgaggaaactatatgaaggtattgagtaaagaaatatcctaggtc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaatgctgctgaggaaactatatgaaggtattgagtaaagaaatatcctaggtc 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)