Query= MSMg01no449_l16.b1 MSMg01no449_l16.b1 CHROMAT_FILE:
MSMg01no449_l16.b1 PHD_FILE: MSMg01no449_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:25 2005
(535 letters)
>mm_chr8_24059915_24060849
Length = 935
Score = 859 bits (444), Expect = 0.0
Identities = 529/604 (87%), Gaps = 72/604 (11%)
Strand = Plus / Plus
Query: 1 ccccgcccccacacatgtgcaacctctcttccttgacacctcccaccataactgatggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccgcccccacacatgtgcaacctctcttccttgacacctcccaccataactgatggat 260
Query: 61 ctacagccagcacagaccatcacactgagtctatgccctgtgcggttcacagttcataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacagccagcacagaccatcacactgagtctatgccctgtgcggttcacagttcataac 320
Query: 121 tgcgtgtatccagcgttctatcatacacaccagtctcagcacctcccagtgtcttctccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcgtgtatccagcgttctatcatacacaccagtctcagcacctcccagtgtcttctccg 380
Query: 181 cgctaattcctagtagtcgctcttttcttcagtaaccccacagttggtttgtttttctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgctaattcctagtagtcgctcttttcttcagtaaccccacagttggtttgtttttctag 440
Query: 241 aaagtcatctacttgtaatctcatgtggtcctttcaggaggatttctttcaggtactatg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtcatctacttggaatctcatgtggtcctttcaggaggatttctttcaggtactatg 500
Query: 301 ttcctaactcctgtcatgacttttcatggctagagagccttattcttttagggaaaatga 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ttcctaactcctgtcatgacttttcatggttagagagccttattcttttagggaaaatga 560
Query: 361 ccttccgcagtctggatgctcacagtttacctgtcacacctggaggaggtaggtggcccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttccgcagtctggatgctcacagtttacctgtcacacctggaggaggtaggtggcccc 620
Query: 421 ttgttcctcccagtgtttacagctgacagta----------------------------- 451
|||||||||||||||||||||||||||||||
Sbjct: 621 ttgttcctcccagtgtttacagctgacagtagtctggatgctcacagtttacctgtcaca 680
Query: 452 ----------------------------------------cagctgctctaaagatccct 471
||||||||||||||||||||
Sbjct: 681 cctggaggaggtaggtggcccttgttcctcccagtgtttacagctgctctaaagatccct 740
Query: 472 ttgcatgctttcatggacatgcatttttaatcttctttgagtccgtatcgaggggagaag 531
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 741 ttgcatgctttcatggacatgcatttttaatctt---tgagtccatatcgaggggagaag 797
Query: 532 ctga 535
||||
Sbjct: 798 ctga 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_l16.g1 MSMg01no449_l16.g1 CHROMAT_FILE:
MSMg01no449_l16.g1 PHD_FILE: MSMg01no449_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:26 2005
(280 letters)
>mm_chr8_24224224_24224903
Length = 680
Score = 518 bits (268), Expect = e-151
Identities = 277/280 (98%)
Strand = Plus / Minus
Query: 1 ccatatatgcaccagctgcatatattcccccatatatgcaccagctgcatgagtttctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccatatatgcaccagctgcatatattcccccatatatgcaccagctgcatgagtttctca 421
Query: 61 cctaaggaactgggcccccgtgggtcccagggcgatgatcctgctggctaggccctcttc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 420 cctaaggaactgggcccccgtgggtcccagggcaatgatcctgctggctaggccctcttc 361
Query: 121 ctcagccagtgggggtggcgtgttcagcttctgcggcttaacgaggcggcaggtgatacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 360 ctcagccagtgggggtggcgtgttcagcttctgcggcttaacgaggcggcaggtgatgcg 301
Query: 181 agtgggtgctgcgcatgtccggggagggatcaccaccctgagtccattatgacggcttcc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 300 agtgggtgctgcgcatgtccggggagggatcaccaccctgaggccattatgacggcttcc 241
Query: 241 tctcatggatccccctcgggcatccaccatgaagctcacc 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tctcatggatccccctcgggcatccaccatgaagctcacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
