Query= MSMg01no449_m17.b1 MSMg01no449_m17.b1 CHROMAT_FILE:
MSMg01no449_m17.b1 PHD_FILE: MSMg01no449_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:30 2005
(553 letters)
>mm_chr8_108896057_108897014
Length = 958
Score = 980 bits (507), Expect = 0.0
Identities = 541/555 (97%), Gaps = 7/555 (1%)
Strand = Plus / Plus
Query: 5 gaattaggtgagtgtcc--tttcagctctcattctggcaccaagaatgcgaacattcccg 62
|||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattaggtgagtg-ccaatttcagctctcattctggcaccaagaaggcgaacattcccg 263
Query: 63 tgtcatactctaaaatctagaactcctctggaattctttgagctcccatagcggaggctt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcatactctaaaatctagaactcctctggaattctttgagctcccatagcggaggctt 323
Query: 123 ggacttcattggaggtacttctgatcttacatcataagatgttttctgagatttacctcg 182
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 ggacttcattggaggtacttctgatcttacatcataagacgttttctgagatttacctcg 383
Query: 183 ttgccttcttggcctggactgctctttcttcctctatcagctgagaaaaatctgcctatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgccttcttggcctggactgctctttcttcctctatcagctgagaaaaatctgcctatc 443
Query: 243 acccaagaggtggttcagtgggccctcttcaccatattctgccctgctcttgaactctct 302
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 444 acccaagaggtggttcagtgggccctcttcaccaaagcctgccctgctcttgaactctct 503
Query: 303 caacagaaaacccagcccacccaagcctgcacaacacacctttcaacactctcaggggct 362
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 caacagaaaacccagcccacccaagcctgcacaacgcacctttcaacactctcaggggct 563
Query: 363 a----ccttgttcacctgtgagcagaaccagctgtaaggtagctgcccttggagttgggt 418
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agctaccttgttcacctgtgagcagaaccagctgtaaggtagctgcccttggagttgggt 623
Query: 419 gtgaatgaaaaggagagaatatcattgctatgcctgacttcctctagtatgttctagaac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgaatgaaaaggagagaatatcattgctatgcctgacttcctctagtatgttctagaac 683
Query: 479 attcttttattgatgcattaataaactatgaattgcacttctattggattatggaatccc 538
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attctttcattgatgcattaataaactatgaattgcacttctattggattatggaatccc 743
Query: 539 tgagaacaggtctga 553
|||||||||||||||
Sbjct: 744 tgagaacaggtctga 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 958
Length adjustment: 10
Effective length of query: 543
Effective length of database: 948
Effective search space: 514764
Effective search space used: 514764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_m17.g1 MSMg01no449_m17.g1 CHROMAT_FILE:
MSMg01no449_m17.g1 PHD_FILE: MSMg01no449_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:30 2005
(483 letters)
>mm_chr8_108993409_108994291
Length = 883
Score = 681 bits (352), Expect = 0.0
Identities = 372/386 (96%), Gaps = 13/386 (3%)
Strand = Plus / Minus
Query: 99 caccaagcctgatgacccaagtttggtctccaggactcacaaggtggagggagagaacca 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 caccaagcctgatgacccaagtttggtctccaggactcacaaggtggagggagagaacca 824
Query: 159 ggtcccccaagctgttccctgacccagtacatccacacacattcaccaccagtcaatgta 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ggtcccccaagctgttccctgacccagtacatccacacacattcaccaccagtcaatgta 764
Query: 219 aaaaaataaaatacttaaaaattttgtcatttttgagtt-aaaaaaaaactagttttttg 277
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 763 aaaaaataaaatacttaaaaattttgtcatttttgagttaaaaaaaaaactagttt---- 708
Query: 278 tttgtttgtttgtttgtttgtttgtttgtttgaaatcagagatgaggttttaagatttgc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 --------tttgtttgtttgtttgtttgtttgaaatcagagatgaggttttaagatttgc 656
Query: 338 gtgtaaagcatctattggtcaaagccagaaaggccaacctccagagcagggaaggggcca 397
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 655 gtgtaaagcatctattggtcaaagccagaaaggccaacctccagagaagggaaggggcca 596
Query: 398 aacagtagactgcagaacaactttgcaggatgctaagtctcaggacacccattgccccct 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aacagtagactgcagaacaactttgcaggatgctaagtctcaggacacccattgccccct 536
Query: 458 gtgtcccactaatctgcattttgtag 483
||||||||||||||||||||||||||
Sbjct: 535 gtgtcccactaatctgcattttgtag 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
