BAC Information

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BAC

Clone NameMSMg01-450E19
Chromosome8 (Build37)
Map Location 53,469,252 - 53,469,494
singlet/doubletsinglet
Overlap gene1190028D05Rik
Upstream geneLOC623872, LOC100040220, LOC623935
Downstream geneLOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450E19.T7 (MSMg01no450_e19.b1)MSMg01-450E19.TJ (MSMg01no450_e19.g1)
ACCAG538062AG538063
length772781
length of high quality
(start - end)
243 (324 - 566)115 (325 - 439)
definitionCHROMAT_FILE: MSMg01no450_e19.b1 PHD_FILE: MSMg01no450_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:10 2005CHROMAT_FILE: MSMg01no450_e19.g1 PHD_FILE: MSMg01no450_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCCATCCTTTTCTATACATTCACATATCCACATACTTGGCTGGATTAT
AAGCAACATCTGAAATAACATATTTTTTTAACTATGACAGGAGATTAATG
AGTGTTGTATAAGAAATAAGTTTAAATTTTTTGCCTAACATTCAAACTTT
ACGTAACATTATGTTAATATAAAAACACTCACACATGCAGAAATATCAAT
GTGGACCAAAAAAGGGAGAGAGAGACAGACACACATATGAGAGGCAGAGA
CAGAGAGAGAGAGAGATATTTTTATTAGGTAGGGTGATTGCCTTAATGTA
ACATGCAAGAAAGAGACACAGTAATGAACTCTTCTTGCAGATTCTGGCTT
GTGCAGATGTAAGTTATCTAACTGGTCCTTTATTAGCTTGCATAGATTGG
ATGTTTTCTAGAAGCATCTGCAGATTCTGTGCTTCACTGAAGTTATAGGA
CTCATCACCACGGTCTGGGTAAGCAAACTGTCGCCTTGTATTTTAATGAT
AGGAGAAAATTACATACTACATGTTTAAAGGAAGAGCTCTCTTTGAGTTT
ACATAAAAACTACAAGTGGTTAGTGAAGTGTGATGGTTAGAGCGCTCACT
CCCTGTATTTATCTTCCACCCACAAAAGGCACAACATTCTCCTTATCCAT
GTCTTCCTGTATTTGCTCGGCATGCCAACCAACTATTACTCCAGCGTATT
ATAACATCCTACTCCTTACCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCTACACTTAGGCATCAAGCCTTCACA
AGACTAAGGGCCTCTCCTCTTATTGATGTCCCACAAGGCCATCCTCTTCT
AAAAATGCAGCTGAAGTTTGAGTTCTTCCCTGTGTACTCTTTGGTTTGTA
GTTTAATCCCTGGGAGTTCTGGGGTTACTGGTTGGTTCATATTGTTGTTT
CTTCTATGGGGCTGCAAACCACTTCAGCTTCTTGGGTCCTTTCTTTAGCT
CCTCCGTTGGGGACCCTGTTCCTTTCCAATGGATGACTGTAACCATGTAC
TTCTGTATTTGTCAGGTACTGGTAGAGCTTCTCAAAAGACAGCTATATAA
GGCTCCTGTCAGCAAGCTGTTCTTGTCATCCAAAATAGTATGTGGGTTTG
GTAGCTGTATATGTTGTGGATTTCTCGTTTCTCACTTTCCTTATACTCCT
CACTCCTTGTTCCATTATCGTCCTTTTCTTTTCTTCTTTTCTTTACTTTT
TTCCCTTTTTCTTTCTTCTTCTAGCTCTTCTTCTTTGCCTCCTCTTTCTA
CTTTCTTCCCTTCTTTTTGCCTTCTCCTCCTTATCCTCCTCGTCCTCTTC
CTCTTCTTTTTTTTTCTTTCTCTTCCTTCTCTCTTTTCTTATCTTCCTCT
TTCTTTTTCTCCTCTTTCTTCTTCTTCCATTTCCCTTTTTCCCATCTCCC
TTTCTCGTTTTCCCTCTTTTTCTTCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_e19.b1 MSMg01no450_e19.b1 CHROMAT_FILE:
MSMg01no450_e19.b1 PHD_FILE: MSMg01no450_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:10 2005
         (243 letters)



>mm_chr8_53469052_53469694
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaggtagggtgattgccttaatgtaacatgcaagaaagagacacagtaatgaactctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 443 attaggtagggtgattgccttaatgtaacatgcaagaaagagacacagtaataaactctt 384

                                                                       
Query: 61  cttgcagattctggcttgtgcagatgtaagttatctaactggtcctttattagcttgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttgcagattctggcttgtgcagatgtaagttatctaactggtcctttattagcttgcat 324

                                                                       
Query: 121 agattggatgttttctagaagcatctgcagattctgtgcttcactgaagttataggactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agattggatgttttctagaagcatctgcagattctgtgcttcactgaagttataggactc 264

                                                                       
Query: 181 atcaccacggtctgggtaagcaaactgtcgccttgtattttaatgataggagaaaattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcaccacggtctgggtaagcaaactgtcgccttgtattttaatgataggagaaaattac 204

              
Query: 241 ata 243
           |||
Sbjct: 203 ata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)