BAC Information

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BAC

Clone NameMSMg01-450E21
Chromosome8 (Build37)
Map Location 33,664,135 - 33,819,035
singlet/doubletdoublet
Overlap genenone
Upstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450E21.T7 (MSMg01no450_e21.b1)MSMg01-450E21.TJ (MSMg01no450_e21.g1)
ACCAG538066AG538067
length759840
length of high quality
(start - end)		583 (47 - 629)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no450_e21.b1 PHD_FILE: MSMg01no450_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:11 2005CHROMAT_FILE: MSMg01no450_e21.g1 PHD_FILE: MSMg01no450_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,664,135 - 33,664,697)(33,818,788 - 33,819,035)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGACATTTCCATGCTGGAAAAGGACTAGGTATTTTACTGCAGG
GGTTTTGATAAGTTACCTTTGTGCTGAAGCATATGAAAAACTAATTCATG
ATTTGGCCATGACTATAAGTTGATCTGAAACCCCTCAATTAAATACTCCA
AATAGCAGGTAACTATGAGAGAAAGAATAGAAGATCTTAATATAACACAG
CTGCTATAAGAACCGCTTTGTTGGTTCATTAGTTTGTGTGTAAATGATTG
AGCCCTTAGTACATCAATCTCTCAGTAGAACATCACCATTTGCCTATACA
GAGCAGGGATAGAGTACACAGATCTGGTCACATGAGTGGTTTCATGGAAA
CTGTCTGTGAGCACTTGCATTTATTTACTTTTTCTTCTTACTGATATAAG
AGGTACAATGGGACAGTGTTAGAACAACACAAACACTGAAACTGAGTAGG
GACATGTGAGAAAGACTTTGTTTCACCTCTGTCACTAACTTAGATGTTAG
GAATTAAGATCTGGTTCTAGCATTGATGCTGACATTGTATCTTATCAGCT
CTACATCTCTAGCAAACCAACTTTTCTGTACATTAATACTTCAACCTGTA
AACCAAAGACCATATTCTATTCCATATTACCCACGACTTTGGGGAAAATT
AAGTGAGCAATGCAAAAACATTTCGCCAACTGTCTAACTTAGAAAGCATC
AAAATACCC

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTAACCTTGGAGGTAGGCCTGT
AGGAGGTGAGTGAGTGGCTGGAATCTCAGGTGAGGCTAAATGACTTGTTC
CACCTTCTTTGAGAGAAGACTTGATCTCATTGAGGGACTCTTTCTGGTGC
CCTGATTAAGATAATGGCTGCTATGCTCAGAGAAAGAGTTCCACGACAGG
GAGGGAGTGGTGGGAGGAGTGNCCAGTCCATGGNTTTGGAAGCTCCAGGA
AGAGGTGTTCACATGGTGCCCTTCTTTTTTTAAGCAGAGCAAGCTAGACC
AGATCTATGAGTAGATATAACACTTTTAAGCATCTTCCCCTAGTGACTTA
CCTCTGTCAACCTGGCCCCATTGGCCTCTGCAGTCTTTCCAACAGTACTG
TATGTCTAACGTTTGGCTTGACCCGTTCCTATCATGATCTCGTTTTCGAT
ACTTTCCAATTTCCCCTCTCCACCTCCTCTTTCTCTTTTTCCGCCCTCGT
TCCTCTTCTCTTCCTCTTTCTTTTCCTTGCTTTTCCCTTCTTCCTTTCTT
CCTCCTTGCCCCTTTCTTCCTCCTCCCTTCCTTTTTCCTCCGTTCCTCCC
CTTTCTTTTTCCCCTTTTCCTTCTTTCTGCTCCTTCTATCTTCTTCCTTC
TCCTTTTCTTCCTCACTCCTGCTTTCCTTCCTTCTTTTCGTCCTCTCCTT
CTTTTCTTTTTCCCCTTTTTCTTCATCTCTTCCTTTTCCCTTTTTCCCCT
CTCCGTCCCTCTTTTTTCCTTCTTTCTTCTTCACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_e21.b1 MSMg01no450_e21.b1 CHROMAT_FILE:
MSMg01no450_e21.b1 PHD_FILE: MSMg01no450_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:11 2005
         (583 letters)



>mm_chr8_33663915_33664897
          Length = 983

 Score = 1081 bits (559), Expect = 0.0
 Identities = 562/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  catgctggaaaaggactaggtattttactgcaggggttttgataagttacctttgtgctg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 catgctggaaaaggactaggtattttactgcaggggttttgataagttacctttgtgctg 280

                                                                       
Query: 81  aagcatatgaaaaactaattcatgatttggccatgactataagttgatctgaaacccctc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagcatatgaaaaactaattcatgatttggccatgactataagttgatctgaaacccctc 340

                                                                       
Query: 141 aattaaatactccaaatagcaggtaactatgagagaaagaatagaagatcttaatataac 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aattaaatactccaaatagcaggtaactatgagagaaagaatagaagatcttaatataac 400

                                                                       
Query: 201 acagctgctataagaaccgctttgttggttcattagtttgtgtgtaaatgattgagccct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acagctgctataagaaccgctttgttggttcattagtttgtgtgtaaatgattgagccct 460

                                                                       
Query: 261 tagtacatcaatctctcagtagaacatcaccatttgcctatacagagcagggatagagta 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tagtacatcaatctctcagtagaacatcaccatttgcctatacagagcagggatagagta 520

                                                                       
Query: 321 cacagatctggtcacatgagtggtttcatggaaactgtctgtgagcacttgcatttattt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cacagatctggtcacatgagtggtttcatggaaactgtctgtgagcacttgcatttattt 580

                                                                       
Query: 381 actttttcttcttactgatataagaggtacaatgggacagtgttagaacaacacaaacac 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 actttttcttcttactgatataagaggtacaatgggacagtgttagaacaacacaaacac 640

                                                                       
Query: 441 tgaaactgagtagggacatgtgagaaagactttgtttcacctctgtcactaacttagatg 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgaaactgagtagggacatgtgagaaagactttgtttcacctctgtcactaacttagatg 700

                                                                       
Query: 501 ttaggaattaagatctggttctagcattgatgctgacattgtatcttatcagctctacat 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttaggaattaagatctggttctagcattgatgctgacattgtatcttatcagctctacat 760

                                  
Query: 561 ctctagcaaaccaacttttctgt 583
           ||||||||||||||||| |||||
Sbjct: 761 ctctagcaaaccaacttctctgt 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no450_e21.g1 MSMg01no450_e21.g1 CHROMAT_FILE:
MSMg01no450_e21.g1 PHD_FILE: MSMg01no450_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:11 2005
         (248 letters)



>mm_chr8_33818588_33819235
          Length = 648

 Score =  468 bits (242), Expect = e-136
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattaaccttggaggtaggcctgtaggaggtgagtgagtggctggaatctcaggtgaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cattaaccttggaggtaggcctgtaggaggtgagtgagtggctggaatctcaggtgaggc 389

                                                                       
Query: 61  taaatgacttgttccaccttctttgagagaagacttgatctcattgagggactctttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taaatgacttgttccaccttctttgagagaagacttgatctcattgagggactctttctg 329

                                                                       
Query: 121 gtgccctgattaagataatggctgctatgctcagagaaagagttccacgacagggaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgccctgattaagataatggctgctatgctcagagaaagagttccacgacagggaggga 269

                                                                       
Query: 181 gtggtgggaggagtgnccagtccatggntttggaagctccaggaagaggtgttcacatgg 240
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 268 gtggtgggaggagtggccagtccatgggtttggaagctccaggaagaggtgttcacatgg 209

                   
Query: 241 tgcccttc 248
           ||||||||
Sbjct: 208 tgcccttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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