Query= MSMg01no450_f16.b1 MSMg01no450_f16.b1 CHROMAT_FILE:
MSMg01no450_f16.b1 PHD_FILE: MSMg01no450_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:15 2005
(533 letters)
>mm_chr8_50680523_50681455
Length = 933
Score = 1007 bits (521), Expect = 0.0
Identities = 530/533 (99%)
Strand = Plus / Plus
Query: 1 caaaactgaagattcatgatgttttcttttaaataaactcaaaaattttatcaattctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaactgaagattcatgatgttttcttttaaataaactcaaaaattttatcaattctat 260
Query: 61 ctcataatcattaactgttttgtgcacttataagtacactctaagcacatgaataaatct 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcataatcattaactgtcttgtgcacttataagtacactctaagcacatgaataaatct 320
Query: 121 taaatctatgatggtcagattcttgttaaacttcagggaaaaaaaagtgtatgttggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatctatgatggtcagattcttgttaaacttcagggaaaaaaaagtgtatgttggtct 380
Query: 181 ttcttaataaactagccgaataaaataccagcaacctgcaatgttagctaccccagaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttaataaactagccgaataaaataccagcaacctgcaatgttagctaccccagaatg 440
Query: 241 cactgcaggtgttgtcagagatgtgagcctggggaggcacattttcccagctatgaagag 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgcaggtgatgtcagagatgtgagcctggggaggcacattttcccagctatgaagag 500
Query: 301 ccaattcaggccttttgctttgctcagatctccttttgtcttagcagggggtgccaattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaattcaggccttttgctttgctcagatctccttttgtcttagcagggggtgccaattg 560
Query: 361 tgccaaccggtgctgaattaattggggttgtttggctcagtctcctgttacttgccaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccaaccggtgctgaattaattggggttgtttggctcagtctcctgttacttgccaaca 620
Query: 421 tatatggaaaaaaataagaacaagaacaactgaatgataaaaccacattgatacattttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatggaaaaaaataagaacaagaacaactgaatgataaaaccacattgatacattttt 680
Query: 481 attttataatatgttgtcaatccaccttccattcttcctgaacactaactagt 533
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 attttataatatgttgtcaatccaccttcaattcttcctgaacactaactagt 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_f16.g1 MSMg01no450_f16.g1 CHROMAT_FILE:
MSMg01no450_f16.g1 PHD_FILE: MSMg01no450_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:15 2005
(576 letters)
>mm_chr8_50844983_50845958
Length = 976
Score = 977 bits (505), Expect = 0.0
Identities = 545/576 (94%), Gaps = 27/576 (4%)
Strand = Plus / Minus
Query: 1 atgaataaatgaatganatactctaaattacaatgacttgtcctttctcttaacctctat 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atgaataaatgaatgaaatactctaaattacaatgacttgtcctttctcttaacctctat 497
Query: 61 agttctggtttggagaaacgaatacataaacttctctatgctgacatttgtgtctactca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agttctggtttggagaaacgaatacataaacttctctatgctgacatttgtgtctactca 437
Query: 121 atcactgtaagtgtatgtcattcatgtggtatttggtccttttaaaatatttccataaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atcactgtaagtgtatgtcattcatgtggtatttggtccttttaaaatatttccataaga 377
Query: 181 aaaactacttgattcacaaactggttataaaactcatgtcaaaaagaagaaatgagtgtg 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 aaaactacttgattcacaaactggttataaaactcatgtaaaaaagaagaaatgagtgtg 317
Query: 241 tcctctcatctaagcatgttcagtgttggaaacactgctgaataataagtacatcagatg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcctctcacctaagcatgttcagtgttggaaacactgctgaataataagtacatcagatg 257
Query: 301 tgtaattgagttagtgaataatggcttttataggccaagggtacagaggaatagttccag 360
||||||||||||||||||||| ||||||||| ||
Sbjct: 256 tgtaattgagttagtgaataaaggcttttat---------------------------ag 224
Query: 361 gccaagggtacagaggaatagtttcatagactctattagaagattagtaatactcaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gccaagggtacagaggaatagtttcatagactctattagaagattagtaatactcaatca 164
Query: 421 aagattcatgcaaatgagttacaggcacctaatatggggagtccagacagcagcatgtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aagattcatgcaaatgagttacaggcacctaatatggggagtccagacagcagcatgtca 104
Query: 481 tccacagggaatgtatttgccaccgacgaattcagtactccatcagcatgccagcttcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tccacagggaatgtatttgccaccgacgaattcagtactccatcagcatgccagcttcct 44
Query: 541 ttattcaagccttcccatttgtcagtgctatatttg 576
||||||||||||||||||||||||||||||||||||
Sbjct: 43 ttattcaagccttcccatttgtcagtgctatatttg 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
