ACTGTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGAGTTCCCAGGCAGGAGGACTAAGGTTCATGTTCTG
CATAGGCTACTAAGTGAGTTCAAGGCCAACATGGAAAGTTAATAACATCA
TTGTTCAGAAATAAAAGTAACAAGTATGTGATAGGTGTAGCTTATTGGTG
AAATGTTTTCATAGCTTGTATGAGAGACTATATTTAACCTTCAGCACTGT
TAAAGCTGAATTTAAACTAAACTATAAACAGACAAAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAACCTAGAACGAGTTTTAACTATTTGGATGCAAG
AAAGGATAGAGTTTAAAGTTGGTATATTTTAGCATCATGATGTTACCAAC
TAACAGGCCAGTAAAACTGGTGTTGTATATAAAGGATTTTTTATCCAAGT
TATATGATTTTAAAGTAACAGTTAAATCTTTAGAGTAAATTAATAACAAG
GTAAATTAGTAGCAAGTTTTTCATGAGAGATGCTTCTCATTTCCATAGAG
GGCAAATAACACAAAGAAATCCCAACAGAGTTAGTCACTCTTCCACTAGC
TGACTTTGGATGAAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCTG
CCTGGATGCTGCCATGCTCCCACCTTGATGGTAATGGA

CTTACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTGGATTTCCTTGACC
AGTAAGGTGAAAATATCTAGTAACTGGCATTTTAAGGTTTTTATTAGACA
CAATATTGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT
TGGACATATTACTACTGGAAGATCCAGCAATACCTCTTCTGGGCATATAT
CCAGAAGATGCCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT
CAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGGATTTATGAAATTCCTAGGCAAATGGAT
GGATCTGGAGGGCTTCATCCTGAGTGAGGTAACCCAATCACAAAGGAACT
CTCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTACGA
TACCCAAGATATAAGATACAATTTGCTAAACACATTAAGCTCAAGAGAAC
GAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATAGGAAACAAAAC
ACCCATGGAAGGAGTTACAGAGACAAAATTTGTA

Query= MSMg01no451_c04.b1 MSMg01no451_c04.b1 CHROMAT_FILE:
MSMg01no451_c04.b1 PHD_FILE: MSMg01no451_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:16 2005
         (483 letters)



>mm_chr8_43171651_43172533
          Length = 883

 Score =  754 bits (390), Expect = 0.0
 Identities = 403/412 (97%), Gaps = 9/412 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaggaggactaaggttcatgttctgcataggctactaagtgagttcaaggccaacatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gcaggaggactaaggttcatgttctgcataggctactaagtgagttcaaggccaacatgg 352

                                                                       
Query: 61  aaagttaataacatcattgttcagaaataaaagtaacaagtatgtgataggtgtagctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaagttaataacatcattgttcagaaataaaagtaacaagtatgtgataggtgtagctta 292

                                                                       
Query: 121 ttggtgaaatgttttcatagcttgtatgagagactatatttaaccttcagcactgttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttggtgaaatgttttcatagcttgtatgagagactatatttaaccttcagcactgttaaa 232

                                                                       
Query: 181 gctgaatttaaactaaactataaacagacaa--------aaagaaagaaagaaagaaaga 232
           |||||||||||||||||||||||||||||||        |||||||||||||||||||||
Sbjct: 231 gctgaatttaaactaaactataaacagacaaaaagaaagaaagaaagaaagaaagaaaga 172

                                                                       
Query: 233 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 112

                                                                       
Query: 293 aacctagaacgagttttaactatttggatgcaagaaaggatagagtttaaagttggtata 352
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 111 aacctagaacgagttttaactattt-gatgcaagaaaggatagagtttaaagttggtata 53

                                                               
Query: 353 ttttagcatcatgatgttaccaactaacaggccagtaaaactggtgttgtat 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ttttagcatcatgatgttaccaactaacaggccagtaaaactggtgttgtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)