Query= MSMg01no451_d02.b1 MSMg01no451_d02.b1 CHROMAT_FILE:
MSMg01no451_d02.b1 PHD_FILE: MSMg01no451_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:21 2005
(594 letters)
>mm_chr8_13199936_13200929
Length = 994
Score = 1094 bits (566), Expect = 0.0
Identities = 584/590 (98%)
Strand = Plus / Plus
Query: 5 gaattcttcataagccgcatagtcaaagtcttcgggcctttcaaacccatacggatcgat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcataagccgcatagtcaaagtcttcgggcctttcaaacccatacggatcgat 264
Query: 65 cctacaaacaaaaagaacctgtttccccgaaccaagtttccgcgcttgcggggatgcggc 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 cctacaaacaaaaagaacctgtttccccgaaccaagtttccgcgcctgcggggatgcggc 324
Query: 125 tggggtccaagagctcccacacccgacacccctcggtccgcccctccgtccatcctcagt 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggggtccaagagctccgacacccgacacccctcggtccgcccctccgtccatcctcagt 384
Query: 185 tcaccttcccttcctctcttcctcccctcctccatcccctccaccccctcatgcccctcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaccttcccttcctctcttcctcccctcctccatcccctccaccccctcatgcccctcg 444
Query: 245 ctctccgtggaccagagcgcgtcccccgcgcagcatcgactggctcagacccagtccggg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctccgtggaccagagcgcgtcccccgcgcagcatcgactggctcagacccagtccgga 504
Query: 305 gagggcgcccagcaccccgcgcgcacggcctccgcacccacctgggcacccgagctcgcg 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 gagggcgcccagcaccccgcgcgcgcggcctccgcacccacctgggcacccgagctcgcg 564
Query: 365 ccgcctgcgcgcgctctgcgggatccatgcggagaagggccagggaccgcgggactcaaa 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 ccgcctgcgcgcgctctgcgggatccatgcggagaagggccagggaccgcgggactcaca 624
Query: 425 accactgcagccccgagcgctggaccccggtgcgccgctggccccggggcgcgcgagtgc 484
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acctctgcagccccgagcgctggaccccggtgcgccgctggccccggggcgcgcgagtgc 684
Query: 485 ttccggcgggggcgtggccgagacgggggcggggtggggacgaggggcggagtcagtggg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttccggcgggggcgtggccgagacgggggcggggtggggacgaggggcggagtcagtggg 744
Query: 545 ggcggggcggggtagagtggacggagcggggctggggtgggggcggtgtc 594
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggcggggcggggtagagtggacggagcggggctggggtgggggcggtgtc 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_d02.g1 MSMg01no451_d02.g1 CHROMAT_FILE:
MSMg01no451_d02.g1 PHD_FILE: MSMg01no451_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:21 2005
(647 letters)
>mm_chr8_13324422_13325470
Length = 1049
Score = 1191 bits (616), Expect = 0.0
Identities = 640/652 (98%), Gaps = 8/652 (1%)
Strand = Plus / Minus
Query: 1 tgggttgagttttggcaataaggaaaatctgtcccaaaccatcatgcacagattgttata 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1022 tgggttgagttttggcaataaggaaaatctgccccaaaccatcatgcacagattgttata 963
Query: 61 tagacacaaatttgccagcagttcccgtggacaaatgcgagagtgggtacttgctggatc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 tggacacaaatttgccagcagttcccgtggacaaatgcgagagtgggtacttgctggatc 903
Query: 121 tgatggtaaaactatgtctggtttaatcagaaaccccaaaccttctttgaaagggagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 tgatggtaaaactatgtctggtttaatcagaaaccccaaaccttctttgaaagggagtta 843
Query: 181 attgtttggactcagtccaaatgatggctgggaccaaggaaacagatgagtactgagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 attgtttggactcagtccaaatgatggctgggaccaaggaaacagatgagtactgagagg 783
Query: 241 aagtaactgcaggatggtacctcaaagttagtgtatcctaattagctaacatggtatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 782 aagtaactgcaggatggtacctcaaagttagtgtatcctaattagctaatatggtatttc 723
Query: 301 aagcctgataattgggtcaaatgcattcctgaaaaggtgaaaagttctgcttgacaccta 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 722 aagcctgataattgggtcaaatgcattcctgaaaaggtgaaaagttctgtttgacaccta 663
Query: 361 caaagggcagcatcatcgtcaaggtcctgtctatgtgttctcatagctacaaaccat--- 417
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 caaagggcagcatc---gtcaaggtcctgtctatgtgttctcatagctacaaaccattgc 606
Query: 418 --gaaaacatcaaacaaaaacatgaagatattcttatgcattcacccggcactccttttg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aggaaaacatcaaacaaaaacatgaagatattcttatgcattcacccggcactccttttg 546
Query: 476 gtatcacgagaggcgtgaagggaagaaggaactgggaactagtcttaggtgaactcccag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtatcacgagaggcgtgaagggaagaaggaactgggaactagtcttaggtgaactcccag 486
Query: 536 acaacgtgtgcctctgcgtcatagggttggagggtagcgacccaaaggtatctgtttgga 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acaacgtgtgcctctgcgtcatagggttggagggtagcgacccaaaggtatctgtttgga 426
Query: 596 aatctttgtcatccaaccctgaaatttagctcccacggtgcagtttttgggt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aatctttgtcatccaaccctgaaatttagctcccacggtgcagtttttgggt 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1049
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1039
Effective search space: 661843
Effective search space used: 661843
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
