BAC Information

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BAC

Clone NameMSMg01-451F02
Chromosome8 (Build37)
Map Location 38,721,330 - 38,721,886
singlet/doubletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451F02.T7 (MSMg01no451_f02.b1)MSMg01-451F02.TJ (MSMg01no451_f02.g1)
ACCAG538837AG538838
length1,129727
length of high quality
(start - end)
---557 (84 - 640)
definitionCHROMAT_FILE: MSMg01no451_f02.b1 PHD_FILE: MSMg01no451_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:31 2005CHROMAT_FILE: MSMg01no451_f02.g1 PHD_FILE: MSMg01no451_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTCTCTATNNNNNNNNNGNNNNNNNNNNNNNNNNNNANNNNACG
GGACCAGCNTCNNNNNTCGCGTGCCGTGAGACGGGCTGTCTGGCNNNNNN
NNNNNNNTCNNNNNNCTCAGCCGGTCTAGGCCGNCTGTTCTCCTCCTCGT
NGNTTTTGTTTNTTCAANCCCCCCCACCTAACGACGAATCACTCTTACCT
CTCTCCTCCTTATTCATTTATTTTATCCCNACCACCACCAAGATCCCTCC
ACATTCACATATTATATCCTCCTTCCCCCCTCCTCCCTTCATTCTCTATC
ATACCTATATAACGAACTCCCACAGCCCCCCCGCGCCTCCTTTCCTCTCT
TCTCCCTCCTTCCGCCGCTCCACANCCCCACCTCATCTACCCCGCCGCGA
CCTCCAGCTTTTCCTATAACCCACTCCATCTCTCTCCACACGTTAATATT
CTCCTGTCCCCTACTATATTATCACCCTCCCCACCCCATCCCATCCTCCT
CCCCCCTCCCCCTTCTTCCTCCCCCCTCTCCCTCTTTATTTATTCACACT
ATTCTTTCTTCTCTTATTCTACGACCTTTCCTTCACTATCCCCCTCTGTC
TTGTCTACGCATCCTCCCCTCTCATTCCTTTCCCTTCTCCCCACCCACAT
CCCTCACAATTCCCGACTCATCTCTCACCATANTTTCTCGCTTCTCCTCC
ATACTGGTCCTCTACCAACTTTTTCCAATTCCTCCATCCATCCCAACTCT
TACCTCCAGCCTTTTAATACACTCCCTACTCCTCCGTTCCTTTACTCCCA
TCTTCCCTCCACCCCTCCTTATATTATTACATATCCCCTCTCACCTCCCC
CACCTCCTCTTGTGCATTCCTTCACACCCTCCCGTTCTTTTTTTTCATCC
TATATATCCCTCTACTCCCTCTCATCCCCTCCTCTCACTCTCTAGATTGT
TGTCTCTCTCCCNCTCCGCACTCCTATCCCTCNAACCCTCCTTCCTACTC
TACCTCCCTATTATATTCTCCTCCTCCCTACAACATCTCGCCCACCCCCA
CCTCTCCTCCGCGCCCTCCACTCATTATCTGTATGTTGATTATATTGTCC
GCACCTTCGTTCTGGCAAGCTTCGCTAAN
AAAAATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCAGCCTGGGCAGT
GGTGACGCACACCTTTAATCCCAGCACTTGGGAGGCATAAAAAAAAAAAA
AAAAAAAAAAAGGAATTCAACTCAGGGTCTTGTTTATATTACCAGGATGT
TCTTTTAACTATGCTGTACCCACAATTATTTTCTAAAATCACTTTATTCT
TAGGCATTGTTCTGTTAACATATCTTGTAAGGTATTTATACATAACAATG
TGCTATTTTCTTATTTTATACATTGGGAATAGTTTTATCCAGACTACAGA
TCAAATCCAGCTATGTATGTAAGCCCTAAAGATTTGTGAGGAAATATTAA
AGTCATCAACTGTGGCTCAAAGAAGTAAATAAGAAGGGAGATATAGGTAC
AACTACATTGCAGTAAAATGCATCTTGAAATAAATGTACATTTCCAAATT
CTGTTTGTCTGACATCTAGATTGGAATCCTAATAGATCTGGAATAAGTGT
CACGGTAAGAATATGTCTACCAGCTGGGCGTGGTGACACATGCCTTTAAT
CCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGC
CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCC
TGTCTCAAAAAAATCAAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_f02.g1 MSMg01no451_f02.g1 CHROMAT_FILE:
MSMg01no451_f02.g1 PHD_FILE: MSMg01no451_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:31 2005
         (557 letters)



>mm_chr8_38721130_38722086
          Length = 957

 Score = 1077 bits (557), Expect = 0.0
 Identities = 557/557 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcagcctgggcagtggtgacgcacacctttaatcccagcacttgggaggcataaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactcagcctgggcagtggtgacgcacacctttaatcccagcacttgggaggcataaaaa 260

                                                                       
Query: 61  aaaaaaaaaaaaaaaaaaggaattcaactcagggtcttgtttatattaccaggatgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaaaaaaaaaaaaggaattcaactcagggtcttgtttatattaccaggatgttct 320

                                                                       
Query: 121 tttaactatgctgtacccacaattattttctaaaatcactttattcttaggcattgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaactatgctgtacccacaattattttctaaaatcactttattcttaggcattgttct 380

                                                                       
Query: 181 gttaacatatcttgtaaggtatttatacataacaatgtgctattttcttattttatacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaacatatcttgtaaggtatttatacataacaatgtgctattttcttattttatacat 440

                                                                       
Query: 241 tgggaatagttttatccagactacagatcaaatccagctatgtatgtaagccctaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggaatagttttatccagactacagatcaaatccagctatgtatgtaagccctaaagat 500

                                                                       
Query: 301 ttgtgaggaaatattaaagtcatcaactgtggctcaaagaagtaaataagaagggagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgaggaaatattaaagtcatcaactgtggctcaaagaagtaaataagaagggagata 560

                                                                       
Query: 361 taggtacaactacattgcagtaaaatgcatcttgaaataaatgtacatttccaaattctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggtacaactacattgcagtaaaatgcatcttgaaataaatgtacatttccaaattctg 620

                                                                       
Query: 421 tttgtctgacatctagattggaatcctaatagatctggaataagtgtcacggtaagaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtctgacatctagattggaatcctaatagatctggaataagtgtcacggtaagaata 680

                                                                       
Query: 481 tgtctaccagctgggcgtggtgacacatgcctttaatcccagcacttgggaggcagaggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtctaccagctgggcgtggtgacacatgcctttaatcccagcacttgggaggcagaggc 740

                            
Query: 541 aggcagatttctgagtt 557
           |||||||||||||||||
Sbjct: 741 aggcagatttctgagtt 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)