BAC Information

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BAC

Clone NameMSMg01-452F10
Chromosome8 (Build37)
Map Location 29,855,337 - 30,095,090
singlet/doubletdoublet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F10.T7 (MSMg01no452_f10.b1)MSMg01-452F10.TJ (MSMg01no452_f10.g1)
ACCAG539614AG539615
length747747
length of high quality
(start - end)
677 (52 - 728)333 (83 - 415)
definitionCHROMAT_FILE: MSMg01no452_f10.b1 PHD_FILE: MSMg01no452_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:52 2005CHROMAT_FILE: MSMg01no452_f10.g1 PHD_FILE: MSMg01no452_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,094,422 - 30,095,090)(29,855,337 - 29,855,649)
sequence
NNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTTTCATAAAGTTCCCCAAGCTTGCTTTCCCTACAAGAGGCTGTCA
TCTCCTTGGGGAGACTTTCTTGACAGCTTGAGAGACACAGGAATGGATTA
ACATCAGGATTCCTCCTGGAAATGTAGGCTGAAGCAAACTCCCCTTCAGG
AATCAGCCTAGAGTCTGTAAGATGAAATGCAAAACGCGGACTTGTTAACT
TGAAATCACACCAGGACCACAAAACCTCCGCAACATACCAGTCTTCATCA
AATTACTCCGGATCCCCTGGGTCGGGAGGTTTTAAACTGAGGAAGTGCAG
TGGTGTGCAGTGGCTACCTTACTAACCACAGCTCCAATTAATTTTTATTC
ATTGATTTTCTTTTTCAGAGTATGTTTTATTTATCAGGCCAGTGTCTTTT
CTCCTTTTGTTTAGAATGTGATACTGAGTTCTCCAACACGCCACAAGCTG
TTTGGAGCTTCTGCATGCATGCAGGGACGGTTTTTCTTGCATGTCCCTTT
CTGGCTGACTTTCTCCTTTCTGTTTCCCATTCTATCCCCTTTCTATGCCC
TTCGTTGAATTTAGAGACTCATTTATCCTCACTGTTATCAAGAGTGAATC
ATCCTATTTATGGGTTTCCGACTTTGTCCATCCAGACATCTATTTAN
TTTTCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTCACTTCCCAAGGT
CTGCCTTAAGCCCTGGGAGGGCAAAAGGATGGAAGGAAATTGATGGTACA
TAATTGTAACTCTGCCTTATTTAGAAGTTTATTTTAGAAAAATCTGCAAC
CCTATAGGTGAAACAACAATATGAACTAACCAGTACCCCCTGGAGCTCAT
GTCTCTAGCTGCATATATATCAGAAGATGGCCTAGTCAGCCATCAGTGGA
AAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTACAGGGAAA
CACCAGGGCCAAGAAGTGGGAGTGGAAGGGTGGGGGAGTGGGTGGTTGTN
TCTTCTGAAAGAGTANCTAACGCTCTTAATCACTGACCCATCTTTCTAGT
CCAGAAAATAAATTTCAAAAAATAAGTAAAAGGAATTGAATATTTTAAAT
ATTGTAGCCATTTGGAAGGTTTTTTTAATTCAAGGGCAGTCTCAGCTACA
CTTTGAGACCCTGCCTCAATAGCTAAGGAGGGCTGGTAGGACAGCCCAGT
GGGAGAAGGTGCTTACTATGGAAGGTTGACAACCTTGACTCTGTCTCTGG
AACTCATTTAATTGGGGAAGGAGAGAGAACTGTATCCCCAGAGCTAATCT
TCTAGCCTTCTATCTTATACCACAGCTTAGTCCTTATAGTAAGTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f10.b1 MSMg01no452_f10.b1 CHROMAT_FILE:
MSMg01no452_f10.b1 PHD_FILE: MSMg01no452_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:52 2005
         (677 letters)



>mm_chr8_30094164_30095240
          Length = 1077

 Score = 1247 bits (645), Expect = 0.0
 Identities = 663/669 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   tctctctttctctctctctctctctctctctctctctctctctctttttcataaagttcc 68
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 927 tctctctctctctctctctctctctctctctctctctctctctctctttcataaagttcc 868

                                                                       
Query: 69  ccaagcttgctttccctacaagaggctgtcatctccttggggagactttcttgacagctt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ccaagcttgctttccctacaagaggctgtcatctccttggggagactttcttgacagctt 808

                                                                       
Query: 129 gagagacacaggaatggattaacatcaggattcctcctggaaatgtaggctgaagcaaac 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gagagacacaggaatggattaacatcaggattcctcctggaaatgtaggctgaagcaaac 748

                                                                       
Query: 189 tccccttcaggaatcagcctagagtctgtaagatgaaatgcaaaacgcggacttgttaac 248
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 747 tccccttcaggaatcagcctagagtctgtaagatgaaatgcaaaatgcggacttgttaac 688

                                                                       
Query: 249 ttgaaatcacaccaggaccacaaaacctccgcaacataccagtcttcatcaaattactcc 308
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 687 ttgaaatcacaccaggaccacaaaacctctgcaacataccagtcttcatcaaattactcc 628

                                                                       
Query: 309 ggatcccctgggtcgggaggttttaaactgaggaagtgcagtggtgtgcagtggctacct 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggatcccctgggtcgggaggttttaaactgaggaagtgcagtggtgtgcagtggctacct 568

                                                                       
Query: 369 tactaaccacagctccaattaatttttattcattgattttctttttcagagtatgtttta 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tactaaccacagctccaattaatttttattcattgattttctttttcagagtatgtttta 508

                                                                       
Query: 429 tttatcaggccagtgtcttttctccttttgtttagaatgtgatactgagttctccaacac 488
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttatcaggccagtgtcttttctacttttgtttagaatgtgatactgagttctccaacac 448

                                                                       
Query: 489 gccacaagctgtttggagcttctgcatgcatgcagggacggtttttcttgcatgtccctt 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gccacaagctgtttggagcttctgcatgcatgcagggacggtttttcttgcatgtccctt 388

                                                                       
Query: 549 tctggctgactttctcctttctgtttcccattctatcccctttctatgcccttcgttgaa 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tctggctgactttctcctttctgtttcccattctatcccctttctatgcccttcgttgaa 328

                                                                       
Query: 609 tttagagactcatttatcctcactgttatcaagagtgaatcatcctatttatgggtttcc 668
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 tttagagactcatttatcctcactgttatcaatagtgaatcatcctatttatgggtttcc 268

                    
Query: 669 gactttgtc 677
           |||||||||
Sbjct: 267 gactttgtc 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no452_f10.g1 MSMg01no452_f10.g1 CHROMAT_FILE:
MSMg01no452_f10.g1 PHD_FILE: MSMg01no452_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:52 2005
         (333 letters)



>mm_chr8_29855137_29855869
          Length = 733

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtcacttcccaaggtctgccttaagccctgggagggcaaaaggatggaaggaaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtcacttcccaaggtctgccttaagccctgggagggcaaaaggatggaaggaaattg 260

                                                                       
Query: 61  atggtacataattgtaactctgccttatttagaagtttattttagaaaaatctgcaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggtacataattgtaactctgccttatttagaagtttattttagaaaaatctgcaaccc 320

                                                                       
Query: 121 tataggtgaaacaacaatatgaactaaccagtaccccctggagctcatgtctctagctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataggtgaaacaacaatatgaactaaccagtaccccctggagctcatgtctctagctgc 380

                                                                       
Query: 181 atatatatcagaagatggcctagtcagccatcagtggaaagagaggcccattggtcgtgc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgtatcagaagatggcctagtcagccatcagtggaaagagaggcccattggtcgtgc 440

                                                                       
Query: 241 aaactttatatgcctcagtacagggaaacaccagggccaagaagtgggagtggaagggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactttatatgcctcagtacagggaaacaccagggccaagaagtgggagtggaagggtg 500

                        
Query: 301 ggggagtgggtgg 313
           |||||||||||||
Sbjct: 501 ggggagtgggtgg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)