BAC Information

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BAC

Clone NameMSMg01-452G16
Chromosome8 (Build37)
Map Location 32,519,719 - 32,520,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik
Downstream geneLOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452G16.T7 (MSMg01no452_g16.b1)MSMg01-452G16.TJ (MSMg01no452_g16.g1)
ACCAG539673AG539674
length761758
length of high quality
(start - end)		700 (49 - 748)638 (80 - 717)
definitionCHROMAT_FILE: MSMg01no452_g16.b1 PHD_FILE: MSMg01no452_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:58 2005CHROMAT_FILE: MSMg01no452_g16.g1 PHD_FILE: MSMg01no452_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACTGTCGCAGACTCTCTTTGGTCCCTGTCTGTGTGGAACGG
GTCTCTGGTTGCGGGTGGACAAGGAGTAGGCAGGAATTGATAGATTTGAC
ACCAGGGAGTGTGAATCTGAATGTAATTTGTCAAATCAAGCATCAAACAT
CTTATACAGAAGAAAATAGGGAAATTGGGTGACACACCGGCAAGGTACAA
AGAAGTTACTGGATTCTTACACAAAACGGAGGAATGCAAACAGAGGACTG
GCAGGAACCAACTGGGATAAAATTCAATGTTAACAACTGGGATCAAAAGC
AGCTCCACCTAAGGTCCACTTAATCTTAGAAGCCAGGGTCAAGGGCTTCG
TGCCCTTGCCATAGTTCCTACTCTAGTCTATTGTATAGTCCACCTTCCCC
CTAGGCCATTGCAAAAACTTGTGTATGGGTGTAACTCAGCTATCTATAGT
TCTAAGTATCTACTCTGGTTCCTCTTTAGGTCACAAACTTCCTTCTTCCT
AGATTATGGTAAATTTCTGTGTAGGGCAGTGATTTAGCTACCCATGCCCA
AGGTCGGATCAAGGACTGCCTAGAATCTAACTTAGCTATATGTCAAAATA
TCAATCCTTAGGAGCACTTGTAATAAAAGAATATTAAGGGAAAGCACACA
GATCCTTTTACCAGCTAAAGCAAGGACATTGGAGCATTCTTTATACAGGA
TGCCACGGTTC

NNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGAGGTCATGGAGATTAC
AACAGGACAATGCATGAAGCTCTGAGGGCAAATCTTACAGTGCAACAGAG
ATCTCATGATGTTAAAGATGCCGGGAGGAGGGAAGTCTTTTCCAGAAAAG
CTTGAAGCCCTGAGTGGAGAAAATCTAAGACAGGGACACACTTCACAAAA
TGGCATTACCATTTAAGGACCATGCATTCAAAACATGAGTTTGGGTAGGA
CATTTCAGATTCAAACCATAACATTCCCTAAGACCCATGGCCACATCAAA
ATGTAAGATGTATTTAGTCCATTTCCAAGAGTTAAGATCCCGGATAGAAT
TAATCAAAGTCTCAGTAGTTGCAACAATGTTCAAAAGACTAAATTTCAAA
AGTCTTCTGAGACTCAGAGCAACCTCTTAATTGTGAACCCCTATAAAATC
AGAAAGAGCCAATCTTAAATAGATGAAGATGTATGTTTATACATAAAGGT
ATATGTATATTCCTTAGCACTGTTGACTGAGAGGGTGTGGGAACATGATG
TGTGTGGTTGAAATATAATGTAGTAAATGAGGATGTCCTTATATGTTTCA
AACAAGCCTTGAATTGTTCAAGAATGGTGGAATATTAAAGAGTAAATTTA
TTCTCAACCTATTTAGGAGAAAAATTCTTTCTTATCATATCATATATACA
ACTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_g16.g1 MSMg01no452_g16.g1 CHROMAT_FILE:
MSMg01no452_g16.g1 PHD_FILE: MSMg01no452_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:58 2005
         (638 letters)



>mm_chr8_32519003_32520040
          Length = 1038

 Score =  571 bits (295), Expect = e-167
 Identities = 316/323 (97%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                        
Query: 316  tagaattaatcaaagtctcagtagttgcaacaatgttcaaaagactaaatttcaaaagtc 375
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 tagaatt-atcaaagtctcagtagttgcaacaatgttcaaaagactaaatttcaaaagtc 980

                                                                        
Query: 376  ttctgagactcagagcaacctcttaattgtgaacccctataaaatcagaaagagccaatc 435
            |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 979  ttctgagattcagagcaacctcttaattgtgaacccctataaaatcagaaagaaccaatc 920

                                                                        
Query: 436  ttaaatagatgaagatgtatgtttatacataaaggtatatgtatattccttagcactgtt 495
            |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 919  ttaaatagatgaagatgtatgtttgtacataaaggtatatgtatattctttagcactgtt 860

                                                                        
Query: 496  gactgagagggtgtgggaacatgatgtgtgtggttgaaatataatgtagtaaatgaggat 555
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  gactgagagggtatgggaacatgatgtgtgtggttgaaatataatgtagtaaatgaggat 800

                                                                        
Query: 556  gtccttatatgtttcaaacaagccttgaattgttcaagaatggtggaatattaaagagta 615
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  gtccttacatgtttcaaacaagccttgaattgttcaagaatggtggaatattaaagagta 740

                                   
Query: 616  aatttattctcaacctatttagg 638
            |||||||||||||||||||||||
Sbjct: 739  aatttattctcaacctatttagg 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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