BAC Information

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BAC

Clone NameMSMg01-452P13
Chromosome8 (Build37)
Map Location 34,984,277 - 34,984,892
singlet/doubletsinglet
Overlap geneRbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452P13.T7 (MSMg01no452_p13.b1)MSMg01-452P13.TJ (MSMg01no452_p13.g1)
ACCAG540097AG540098
length754754
length of high quality
(start - end)		679 (48 - 726)669 (76 - 744)
definitionCHROMAT_FILE: MSMg01no452_p13.b1 PHD_FILE: MSMg01no452_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:41 2005CHROMAT_FILE: MSMg01no452_p13.g1 PHD_FILE: MSMg01no452_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTAGGTACCTCAGTATAGTCTCAAATGCAATAATTCTCTTGC
CTAGATTCTTAGAAAATTCTTAGAATTTCTGGATAATGTGAATTTATGTT
TAACTTTTAAAGAATCTATCAAAATGACTGTTGTGGTTTGGTCTTTTTGT
TGCTGAGCTAAAACACTGACTAGAAATACCATGGGGAGAAAAAGATTTGT
TTGGCTTACAGCCCATCATGAGGGAAGCTGAGGCAGAAACTGAAGCAAAG
ACCACTGGGTATAGTGCTGCCTACTGGGCTGCTTCCCCTTGTCAGACTCC
TCCTCTTCCTCCTCCTTCAAGATTCACATATGTGAGTGTTTTGTCTGCAT
GTATGTCTGTATACCACATGCATGCCTGGTGCCTATGGAGGACAAAATAA
TTAATTTGATTTCCTGGGACTGGAGTTACGGAGTATTGCAAGCTACCATG
TGGTTACTGGGATTGAACTCCGGTTCTTTGGGAGAACAGCCTGTGTTCTT
AACTACTGAGCCATCTCTTTAACCTTAGTCATGTACAACTCAGGAGCACT
AGCCCAGCCAGGGGTGTCACTGTACACAGTGAGCTAGCCCTCTCACATCA
GTTAATCATTCAAGATGGTGCCCCACAGATGTGCTGTGCACAGAGCTAGT
CTTGATGGAGGCAGCTCTTTGATTAAGGGTCCCTCTTTTCAGATGTGTCA
AGTT

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGTTTCTCGAGACAGGGTTTC
TCTGTGTAGCCCTGGCTGTCCCGGAACTCACTCTGTAGACCAGGTTGACC
TCGAACTCAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAG
GCGTGCACCACCACGTCCGGCTTTGATTTGAGATTTTTAAGTTGTTGAAA
TTTACACTTGGCTGGGCATAGTGGCACGCACCTTTAGTCCCAGCACCCAG
GAGGTAGAGGCCAGGGGTTCTCTCTGAGATGTAGAAAAAGTGTTATATTG
TGGTGGTGACTTTACTAAAAAGATCCGTCTTTTTAACGGTCTCGGCTTTC
TGATGAAATTCTTTTACCACACGTAGATGATGTAGCCATTCTCCCACGAG
GTCCAAATCAATGGCAGTAGCTTAGGTTTGGCCATTTGCAAGAGTGACTG
AAAAGCTTTGGCAGGGTAAACCTGCCCGTGTGGGATGTTGTTGGTTGTGT
CTTTATTTGGTCATATTAAAAGAGAGTCTCTGGCACGGTGCGCGCTGTTT
TGTCCACACATATCTTCATCTGTGTTCCAGTCAGAGCTGAGCTGGCACAC
TGGATGCCAGAGGTCACTGACGGGCCAGATCATGTCCGCTTTAAAAAGAT
CTCTCACATGCCCCTAGGTTCTGACAATTCTGCAAACTTTTTCCCAGTTG
GGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_p13.g1 MSMg01no452_p13.g1 CHROMAT_FILE:
MSMg01no452_p13.g1 PHD_FILE: MSMg01no452_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
         (669 letters)



>mm_chr8_34983824_34984892
          Length = 1069

 Score = 1160 bits (600), Expect = 0.0
 Identities = 612/616 (99%)
 Strand = Plus / Minus

                                                                        
Query: 54   cactctgtagaccaggttgacctcgaactcagaaatccacctgtctctgcctcccaagtg 113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 cactctgtagaccaggttgacctcgaactcagaaatccacctgtctctgcctcccaagtg 1010

                                                                        
Query: 114  ctgggattaaaggcgtgcaccaccacgtccggctttgatttgagatttttaagttgttga 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ctgggattaaaggcgtgcaccaccacgtccggctttgatttgagatttttaagttgttga 950

                                                                        
Query: 174  aatttacacttggctgggcatagtggcacgcacctttagtcccagcacccaggaggtaga 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  aatttacacttggctgggcatagtggcacgcacctttagtcccagcacccaggaggtaga 890

                                                                        
Query: 234  ggccaggggttctctctgagatgtagaaaaagtgttatattgtggtggtgactttactaa 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  ggccaggggttctctctgagatgtagaaaaagtgttatattgtggtggtgactttactaa 830

                                                                        
Query: 294  aaagatccgtctttttaacggtctcggctttctgatgaaattcttttaccacacgtagat 353
            ||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||
Sbjct: 829  aaagatccgtctttttaacggtctcggctttctgatgaaattcttttattatatgtagat 770

                                                                        
Query: 354  gatgtagccattctcccacgaggtccaaatcaatggcagtagcttaggtttggccatttg 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  gatgtagccattctcccacgaggtccaaatcaatggcagtagcttaggtttggccatttg 710

                                                                        
Query: 414  caagagtgactgaaaagctttggcagggtaaacctgcccgtgtgggatgttgttggttgt 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  caagagtgactgaaaagctttggcagggtaaacctgcccgtgtgggatgttgttggttgt 650

                                                                        
Query: 474  gtctttatttggtcatattaaaagagagtctctggcacggtgcgcgctgttttgtccaca 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  gtctttatttggtcatattaaaagagagtctctggcacggtgcgcgctgttttgtccaca 590

                                                                        
Query: 534  catatcttcatctgtgttccagtcagagctgagctggcacactggatgccagaggtcact 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  catatcttcatctgtgttccagtcagagctgagctggcacactggatgccagaggtcact 530

                                                                        
Query: 594  gacgggccagatcatgtccgctttaaaaagatctctcacatgcccctaggttctgacaat 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  gacgggccagatcatgtccgctttaaaaagatctctcacatgcccctaggttctgacaat 470

                            
Query: 654  tctgcaaactttttcc 669
            ||||||||||||||||
Sbjct: 469  tctgcaaactttttcc 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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