BAC Information

Click to search

BAC

Clone NameMSMg01-453A09
Chromosome8 (Build37)
Map Location 40,722,515 - 40,723,112
singlet/doubletsinglet
Overlap geneMsr1
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
Downstream geneEG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453A09.T7 (MSMg01no453_a09.b1)MSMg01-453A09.TJ (MSMg01no453_a09.g1)
ACCAG540136AG540137
length742749
length of high quality
(start - end)
691 (52 - 742)607 (82 - 688)
definitionCHROMAT_FILE: MSMg01no453_a09.b1 PHD_FILE: MSMg01no453_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:45 2005CHROMAT_FILE: MSMg01no453_a09.g1 PHD_FILE: MSMg01no453_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTTGCTTTGTACCCCATTTTAATAGGATTATTTG
TTTCTAACTCCTTGAGTCTTATTTAGACTTATTTGAATCTAACTTCTTGA
GTTTTTTGTATATATTGGATATTATCCCTCTATCAGATGTAGGATTGGTA
AAGATCTTTTCCCAATATATGTTGGTTGCTGTTTTGTCCTATTGACAGTG
TCCTTTGCCTTACAGAACTTTTGCAATTTTATGAGGTCCCATTTGTCAAT
TCTTGATCTTAGAGCAAAAGCTATTGATGTTCTGTTCAGGAAAATTTCCC
CTGTGCCCACATGCTTGAGGCTCTTCCCCACTTTCTTTCTATTAGTTTCA
GTGTATCTGGTTTTATGTAGAGGATCTTGACGCACTTGGACTTGAGCTTT
GTACAAGGAGCTAAGAATGGATTGATTTGCATTCTTCTACATGCTAACCA
CCATTTGATCCGGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGA
TGGTTTTAGCTCCATTCTCAAAGATCAATTGACCATAGGTGTGTGTGTTC
ATTTCTGGCTCTTCAATTCTATTCCATTGATCTACCTGCCTTTCACTGTA
CCAATTCCATGCAGTTTTTTATCACAACTGCTCTGTAGTACAGCTTGAGG
TCAGGGATGGTGATTCCACCAGAAGTTATTTTATTGTTGAGA
NNNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTTTTAACCAAAATAT
TCCAACCAGGCTCAAACGTCCTTATATTAGTGTTCTGACCTCCAGAAAGG
CTGAGGCGAAGATAGGAAATACTCATCTTGATTATGCAGGAAGCTCGGGC
TGTGGAAGCAGGAAGATAAGCCTGTCTCACACTGCCAAGGGAAGGCTTTG
GGGATATATGTAGTTTCAAGTCATAGCAGCACACATGCGCGCACACACAC
ACACACACACACACACACACACACACACACACACACACCTACATAAACAC
ACATGGGGGTGCTGTGGCTGGGTGTGCATGCCTATATAATATATGTGTAT
GCATATACACATATGTGTGTGTATGTATATGACCAATTGAAACACTAAGT
TCTTATGGGGCCTGTTATGTTCATATAGGGTCAAAGATGTCAGTGAAAGA
CTGGAAATAAAGCCAAACTCCCTTAGATTCTGAATCACAAATAAACAGAA
GGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGTTTTGCAGCCCCATAGG
AAGAACAACAACATGAACTAACCAGTACCCACAGAGCTCCCTGGGACTAA
ACCACCAACCAAAGAAAACTCATGGCTCTAGCTGCATATGTAGCATACTA
TGGCCTAGTTGATCATCTATGGGAAGAGAGGCCCTTGATCCAGTGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_a09.g1 MSMg01no453_a09.g1 CHROMAT_FILE:
MSMg01no453_a09.g1 PHD_FILE: MSMg01no453_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:45 2005
         (607 letters)



>mm_chr8_40722106_40723112
          Length = 1007

 Score = 1156 bits (598), Expect = 0.0
 Identities = 598/598 (100%)
 Strand = Plus / Minus

                                                                        
Query: 10   accaaaatattccaaccaggctcaaacgtccttatattagtgttctgacctccagaaagg 69
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 accaaaatattccaaccaggctcaaacgtccttatattagtgttctgacctccagaaagg 948

                                                                        
Query: 70   ctgaggcgaagataggaaatactcatcttgattatgcaggaagctcgggctgtggaagca 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  ctgaggcgaagataggaaatactcatcttgattatgcaggaagctcgggctgtggaagca 888

                                                                        
Query: 130  ggaagataagcctgtctcacactgccaagggaaggctttggggatatatgtagtttcaag 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  ggaagataagcctgtctcacactgccaagggaaggctttggggatatatgtagtttcaag 828

                                                                        
Query: 190  tcatagcagcacacatgcgcgcacacacacacacacacacacacacacacacacacacac 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  tcatagcagcacacatgcgcgcacacacacacacacacacacacacacacacacacacac 768

                                                                        
Query: 250  acacacacctacataaacacacatgggggtgctgtggctgggtgtgcatgcctatataat 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  acacacacctacataaacacacatgggggtgctgtggctgggtgtgcatgcctatataat 708

                                                                        
Query: 310  atatgtgtatgcatatacacatatgtgtgtgtatgtatatgaccaattgaaacactaagt 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  atatgtgtatgcatatacacatatgtgtgtgtatgtatatgaccaattgaaacactaagt 648

                                                                        
Query: 370  tcttatggggcctgttatgttcatatagggtcaaagatgtcagtgaaagactggaaataa 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  tcttatggggcctgttatgttcatatagggtcaaagatgtcagtgaaagactggaaataa 588

                                                                        
Query: 430  agccaaactcccttagattctgaatcacaaataaacagaaggagctagagaaagtaccca 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  agccaaactcccttagattctgaatcacaaataaacagaaggagctagagaaagtaccca 528

                                                                        
Query: 490  aggagctgaagggttttgcagccccataggaagaacaacaacatgaactaaccagtaccc 549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  aggagctgaagggttttgcagccccataggaagaacaacaacatgaactaaccagtaccc 468

                                                                      
Query: 550  acagagctccctgggactaaaccaccaaccaaagaaaactcatggctctagctgcata 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  acagagctccctgggactaaaccaccaaccaaagaaaactcatggctctagctgcata 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)