BAC Information

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BAC

Clone NameMSMg01-453F24
Chromosome8 (Build37)
Map Location 108,343,364 - 108,344,014
singlet/doubletsinglet
Overlap geneRanbp10
Upstream geneBC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Downstream geneTsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453F24.T7 (MSMg01no453_f24.b1)MSMg01-453F24.TJ (MSMg01no453_f24.g1)
ACCAG540403AG540404
length773780
length of high quality
(start - end)		640 (47 - 686)553 (75 - 627)
definitionCHROMAT_FILE: MSMg01no453_f24.b1 PHD_FILE: MSMg01no453_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:14 2005CHROMAT_FILE: MSMg01no453_f24.g1 PHD_FILE: MSMg01no453_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTGCCTTTTATCCCAGCACTTGGGAGGCAAATGGATTTCTGAG
TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAGACAGTCAGGGCTAT
ATAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAGAAAAATGGAT
TCCAGCTTCCTCAACCCATGCCAGAGCTACATCCCAAGATGTCCAAACTA
GTTTTCACCTTCAATATAGGTAAGGCTCTATCACCCCAAGAGGCTCCAGC
GGCTCCAGTAACAGCACAGTATTTGGCACTTGAGGAAACACGCATCCTTA
AGCTCACTCCTAATTCTACCAGCTCTGGGGCAGTCAGGGAGAACAGGACG
GCACTGCTGGCTACCTACCAGTGCTCTGACAAGGATAGCACCTGCTCCTC
AGGGCAGAGGAGGGAAGGCATTAGCCAGTCCACAGATAAGCAGGGCTTCA
ACAGCACTGAACCATGCACAGACAGCAGAATGGGGGAGGGGCTCTTGAAT
GAGGGGACCAAGAAGGTGACAGGTAAGATCTTAATAAAGTGACTCTCGGT
CTCCATTGCAAGTCATTTTGGGTGATCCAAACACATGAGAAGGAAATGCT
TAGGCATAAAACATAGGATGATACTGTCTTTCAAAGAGAAGCTGGCAAAA
CCAAACCATCAGACAACGACCACGTAAGCAGAGAATCACTCTACCTCTGA
GAAAGAGAAAAGGACATACTAAG

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATCTATACCCCATTTTT
TAATTGGAATTTTTTTTCTGTTGACGTCTAGTTTCTTGAGTTCTTTATGT
ATTTTGGAATAATGGCCCTTTGTCAGATATGCTATTGATGAAAATATTTT
CCCATTCTATGTTGTCTGTAGGCTTCTGTGTTGTCCTATTGGCAGTGTCC
TTTGCATTACAGAAGCTTTTCAGTTTCATGAAGTCCCATTTATTGTCAAC
CTTAGTGTTTGAGCTATCGGTGTTCTGTTCAGGAAGTTGTCTCCTGTGAC
AATAAGTTCAAGGCTATGTCCAATTTGGATATTCTCTCTGTCTTGTAGTT
AGTTTGGATAAGTGTTTGTCAATCTTGTTGATTTTCTCAAAGAACCAACT
CTTTATTTCACTGATTCTTTGTATTGTTCTCCTTGTTTCTAATTGATAGA
TTTCAGCCCGAGTTTGGTTATTTCCCACCTTCCACTACTCTTGGGTGTTT
GCTTCTTTTTGTTCTAGAGCTTTCAGGTGTACTGTTATGTTGCTGGTATG
AGATATCTCTAATTTCTTTATGAAGGCACTTAGTGGTATGAACTTTCCTC
TTAGCACCACTTTCATTGTGTCTCATAAGTTTGGGGATGTTGTGCATTCA
TTTTCATTTAATTCTATGAAGGCTTTAATTTCTTTTTTCTGCCTTGACCC
AGTAGTCATTCATTAGAGAGGTGTTCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_f24.b1 MSMg01no453_f24.b1 CHROMAT_FILE:
MSMg01no453_f24.b1 PHD_FILE: MSMg01no453_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:14 2005
         (640 letters)



>mm_chr8_108343168_108344214
          Length = 1047

 Score = 1094 bits (566), Expect = 0.0
 Identities = 624/652 (95%), Gaps = 17/652 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgccttttatcccagcacttgggaggcaaatggatttctgagttcgaggcca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattccttgcctttaatcccagcacttgggaggcaaatggatttctgagttcgaggcca 256

                                                                       
Query: 65  gcctggtctacaaagtgagttccaagacagtcagggctatatagagaaaccctgtcttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcctggtctacaaagtgagttccaagacagtcagggctatatagagaaaccctgtcttga 316

                                                                       
Query: 125 aaaacc--------aaaaaaaaaaaaagaaaaatggattccagcttcctcaacccatgcc 176
           ||||||        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaaccaaaaaaaaaaaaaaaaaaaaagaaaaatggattccagcttcctcaacccatgcc 376

                                                                       
Query: 177 agagctacatcccaagatgtccaaactagttttcaccttcaatataggtaaggctctatc 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 377 agagctacatcccaagatgtccaaactagttttcaccttcaatataggtaagactctatc 436

                                                                       
Query: 237 accccaagaggctccagcggctccagtaacagcacagtatttggcacttgaggaaacacg 296
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 accccaagaggctccagaggctccagtaacagcacagtatttggcacttgaggaaacacg 496

                                                                       
Query: 297 catccttaagctca-------ctcctaattctaccagctctggggcagtcagggagaaca 349
           ||||||||||||||       |||| ||||| ||||||||||||||||||||||||||||
Sbjct: 497 catccttaagctcagcagccactcc-aattccaccagctctggggcagtcagggagaaca 555

                                                                       
Query: 350 ggacggcactgctggctacctaccagtgctctgacaaggatagcacctgctcctcagggc 409
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 556 ggacggcactgctggctacctaccagtgctctgacaaggatagcacctactcctcagggc 615

                                                                       
Query: 410 agaggagggaaggcattagccagtccacagataagcagggcttcaacagcactgaaccat 469
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 616 agaggagggaaggcattagccagtccacagataagcagagcttcaacagcactgaaccat 675

                                                                       
Query: 470 gcacagacagcagaatggggg-aggggctcttgaatgaggggaccaagaaggtgacaggt 528
           ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 676 gcacagacaccagaatggggggaggggttcttgaatgagaggaccaagaaggtgacaggt 735

                                                                       
Query: 529 aagatcttaataaagtgactctcggtctccattgcaagtcattttgggtgatccaaacac 588
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 736 aagatcttaataaagtgactctcggtctccattacaaatcattttgggtgatccaaacac 795

                                                               
Query: 589 atgagaaggaaatgcttaggcataaaacataggatgatactgtctttcaaag 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 atgagaaggaaatgcttaggcataaaacataggatgatactgtctttcaaag 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1047
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1037
Effective search space:   653310
Effective search space used:   653310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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