BAC Information

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BAC

Clone NameMSMg01-453L12
Chromosome8 (Build37)
Map Location 72,886,964 - 73,041,900
singlet/doubletdoublet
Overlap geneComp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52
Upstream geneLOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1
Downstream geneFkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453L12.T7 (MSMg01no453_l12.b1)MSMg01-453L12.TJ (MSMg01no453_l12.g1)
ACCAG540665AG540666
length765765
length of high quality
(start - end)		677 (49 - 725)612 (77 - 688)
definitionCHROMAT_FILE: MSMg01no453_l12.b1 PHD_FILE: MSMg01no453_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:41 2005CHROMAT_FILE: MSMg01no453_l12.g1 PHD_FILE: MSMg01no453_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,041,265 - 73,041,900)(72,886,964 - 72,887,575)
sequence
NNAACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGTTGTTTTACAAGGTAGATCTGACCTCTGAGGGAGTAATC
TGGAAGTAGTGAGTCTACCCCCCACCCCCACCCCGCCTCCAATCCCACCC
ACTCCCACTTGTTTTTGAGACAGGGTTTCTCTCTGTGTAGCCTTTGCTGT
TCTGGGACTCCCTCTGTAGAATAGGCTGGTCTCAAACCCAGAGATCCATC
TGCCTCTGCTTCATGGGTGCTGGGATTGAAGGCGTAGGCATTTAAACACC
CAGTTGTGACTTTCCCTTTTATTTGATAACTGTGCTACGTAGCTGGGACC
CAAATATAAGTCAGGAGAGGTTATAGTTGGGTAGACAGGCCAGGCCCTCC
ACTTCTAGCTGGCTGGCCAGCAGAACACCAGGGACCCGGGTCCATCCTGG
ATAGAGGCAGGTTTGGTTGGGTCTTCCCACAGTGGTGCTGGCTCCTGGAC
CATGATACCCATGTCTGTGGCACTTAGGTGCTCCTTCAGATGTACTTCCC
AGCCTTACCTATCACTGCAGTGGACACACCTGCAGCCAGCTGCCCAGACC
CAGAACAGCCAAGACCATGGGATCCAGATCACACATATGCCCTTTTTTTC
CCTCAGCCCAAGGCTCTGGCCTTGGGACCTAAGGGGACAAAGTAAACTCT
ACTCAAAAGTTTTGAGATGTTCTAAACCAGNCTATTTCATTCTCTTTTTT
TTTTAAATATTTTTN

NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAATACTGCTCCAAGGTGTTT
GTACCAAGCACGAGATGGAGCCTGGGACGTGGTGCACACACACTTCTGTT
GCCCCTTCTGCTCCTGCTTGCCCAGCCAAGAGACCTCCTTCCTCACCTCC
ACATCTCCCATAATGGACTCAGCACTCCCAGTGTCCTGACTCTTATCTCT
CCTCCAATCACAGTGCAGAGGGTCTTCCTCATGACCCTCCCAGAGCTGTA
TGTGCACCCCGATCATGGCTCTAACCAGTCTGCATTGACTAATGTTGAAA
TTGTGTGTTATGATCCTGGAGGGTTGTTGCGGGGGAGTGGAAGGAGGTAG
ATGCTTTTCAAAATCATAGGGTCTGGCAAGTCACATGGTCCCTGAAAAGA
CACTACCCTCTCTGCTGTGTTAGCTATGCTAGCAACAGATAAAACACATT
TAAGTCAAGGTAAAAGGAGGCATGGAAGCAGGGAAGAAGAGCTTTCAGAC
AGAGAGGTCAGCTTGTGCAAAAACCCTGGGGTCAGGAAGTGCCTGTGGGC
AGAGATCTGCTCACAGGAGGCCTCATGCGTGGAGGAAGGACAGGGATATA
GTCTTTGGGCAAAAGGAAGCTATGAAGGGTGGGTGAGCAGAGGGAGGAAC
ATGGCCTAATTCATAATATTTTTCTGTTTCCTTTTGGTTTATTTGGAGAC
ATGATCTTACTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_l12.b1 MSMg01no453_l12.b1 CHROMAT_FILE:
MSMg01no453_l12.b1 PHD_FILE: MSMg01no453_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:41 2005
         (677 letters)



>mm_chr8_73040824_73041900
          Length = 1077

 Score = 1230 bits (636), Expect = 0.0
 Identities = 636/636 (100%)
 Strand = Plus / Minus

                                                                        
Query: 42   agggagtaatctggaagtagtgagtctaccccccacccccaccccgcctccaatcccacc 101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 agggagtaatctggaagtagtgagtctaccccccacccccaccccgcctccaatcccacc 1018

                                                                        
Query: 102  cactcccacttgtttttgagacagggtttctctctgtgtagcctttgctgttctgggact 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 cactcccacttgtttttgagacagggtttctctctgtgtagcctttgctgttctgggact 958

                                                                        
Query: 162  ccctctgtagaataggctggtctcaaacccagagatccatctgcctctgcttcatgggtg 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  ccctctgtagaataggctggtctcaaacccagagatccatctgcctctgcttcatgggtg 898

                                                                        
Query: 222  ctgggattgaaggcgtaggcatttaaacacccagttgtgactttcccttttatttgataa 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  ctgggattgaaggcgtaggcatttaaacacccagttgtgactttcccttttatttgataa 838

                                                                        
Query: 282  ctgtgctacgtagctgggacccaaatataagtcaggagaggttatagttgggtagacagg 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  ctgtgctacgtagctgggacccaaatataagtcaggagaggttatagttgggtagacagg 778

                                                                        
Query: 342  ccaggccctccacttctagctggctggccagcagaacaccagggacccgggtccatcctg 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777  ccaggccctccacttctagctggctggccagcagaacaccagggacccgggtccatcctg 718

                                                                        
Query: 402  gatagaggcaggtttggttgggtcttcccacagtggtgctggctcctggaccatgatacc 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  gatagaggcaggtttggttgggtcttcccacagtggtgctggctcctggaccatgatacc 658

                                                                        
Query: 462  catgtctgtggcacttaggtgctccttcagatgtacttcccagccttacctatcactgca 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657  catgtctgtggcacttaggtgctccttcagatgtacttcccagccttacctatcactgca 598

                                                                        
Query: 522  gtggacacacctgcagccagctgcccagacccagaacagccaagaccatgggatccagat 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597  gtggacacacctgcagccagctgcccagacccagaacagccaagaccatgggatccagat 538

                                                                        
Query: 582  cacacatatgccctttttttccctcagcccaaggctctggccttgggacctaaggggaca 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537  cacacatatgccctttttttccctcagcccaaggctctggccttgggacctaaggggaca 478

                                                
Query: 642  aagtaaactctactcaaaagttttgagatgttctaa 677
            ||||||||||||||||||||||||||||||||||||
Sbjct: 477  aagtaaactctactcaaaagttttgagatgttctaa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_l12.g1 MSMg01no453_l12.g1 CHROMAT_FILE:
MSMg01no453_l12.g1 PHD_FILE: MSMg01no453_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:41 2005
         (612 letters)



>mm_chr8_72886764_72887775
          Length = 1012

 Score = 1183 bits (612), Expect = 0.0
 Identities = 612/612 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaatactgctccaaggtgtttgtaccaagcacgagatggagcctgggacgtggtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaatactgctccaaggtgtttgtaccaagcacgagatggagcctgggacgtggtgca 260

                                                                       
Query: 61  cacacacttctgttgccccttctgctcctgcttgcccagccaagagacctccttcctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacacttctgttgccccttctgctcctgcttgcccagccaagagacctccttcctcac 320

                                                                       
Query: 121 ctccacatctcccataatggactcagcactcccagtgtcctgactcttatctctcctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccacatctcccataatggactcagcactcccagtgtcctgactcttatctctcctcca 380

                                                                       
Query: 181 atcacagtgcagagggtcttcctcatgaccctcccagagctgtatgtgcaccccgatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcacagtgcagagggtcttcctcatgaccctcccagagctgtatgtgcaccccgatcat 440

                                                                       
Query: 241 ggctctaaccagtctgcattgactaatgttgaaattgtgtgttatgatcctggagggttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctctaaccagtctgcattgactaatgttgaaattgtgtgttatgatcctggagggttg 500

                                                                       
Query: 301 ttgcgggggagtggaaggaggtagatgcttttcaaaatcatagggtctggcaagtcacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcgggggagtggaaggaggtagatgcttttcaaaatcatagggtctggcaagtcacat 560

                                                                       
Query: 361 ggtccctgaaaagacactaccctctctgctgtgttagctatgctagcaacagataaaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtccctgaaaagacactaccctctctgctgtgttagctatgctagcaacagataaaaca 620

                                                                       
Query: 421 catttaagtcaaggtaaaaggaggcatggaagcagggaagaagagctttcagacagagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttaagtcaaggtaaaaggaggcatggaagcagggaagaagagctttcagacagagag 680

                                                                       
Query: 481 gtcagcttgtgcaaaaaccctggggtcaggaagtgcctgtgggcagagatctgctcacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcagcttgtgcaaaaaccctggggtcaggaagtgcctgtgggcagagatctgctcacag 740

                                                                       
Query: 541 gaggcctcatgcgtggaggaaggacagggatatagtctttgggcaaaaggaagctatgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaggcctcatgcgtggaggaaggacagggatatagtctttgggcaaaaggaagctatgaa 800

                       
Query: 601 gggtgggtgagc 612
           ||||||||||||
Sbjct: 801 gggtgggtgagc 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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