BAC Information

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BAC

Clone NameMSMg01-454D07
Chromosome8 (Build37)
Map Location 81,360,766 - 81,360,990
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6
Downstream geneEG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454D07.T7 (MSMg01no454_d07.b1)MSMg01-454D07.TJ (MSMg01no454_d07.g1)
ACCAG541037AG541038
length742772
length of high quality
(start - end)
226 (326 - 551)243 (70 - 312)
definitionCHROMAT_FILE: MSMg01no454_d07.b1 PHD_FILE: MSMg01no454_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:19 2005CHROMAT_FILE: MSMg01no454_d07.g1 PHD_FILE: MSMg01no454_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATAAGAGAGGG
CGGAANTCAGNGGTTGACAAAAAAGCAAGCATACGTAAGGCTGCACAATC
CACCCCATCCTCCCCAAATATTAACACTAACAATAAATGTACGAATCCCT
GGAAATAGTGATTCTATACTGGGAGCCTTATCTAAGCAAATACTAAGATG
AGAATTGTATTTATCTGTATTTGTGTACATATATATGTGTGCATATATCT
TGTTAGAATGTTCACATGCATAGACACTTAAATATGTGTTGTTAGGAATG
GAATGAATAAAAATGCTTAGTTGNTTAATAATTAAAAAGTTAAGTTGCTG
TGTTATTCTGCAATGAAAATGATTTCATAGTCATAGGCATGTGAAGATTT
TTCATACATTATAATTAAAATAATTAAATGATACAACAGTATGTAAGATA
CAGTATTAAGAAACACATAAAAGGAGTGGCTCCACCTTCCAACACTGTTT
TTCCTGGGAATGGTTAAAAAAAAAAAAGAAGCAAATTTTGAAATACTTTT
TAATAAAAAATTGCAATTTCCTCCCACTTATTTATGGAATATCTGACATA
CTTTTATGATAAATGGATGACTGCCTCTTCTATTAAACTTGTCTTCCTCC
TTATTGGGAATAAAACGGGCCCATAAAATGGTTTGATTCACTCTCAGTTC
CTGATCCGTATTCCGGTAAAAAATTGACCTGACTAAATCCCA
CTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTACAGAAAAATTCCAATTAGGTTGGTGTTAGCTGTGAATT
CTTTACTATGTTGAGGTCTCGTCTCTTGAATCCCTAGTTTTTGTTTTTGT
TTTTTCAGGACTTTTATCATGAAGAGGTGTTGCGTTTTGTCAAAGGCCTT
TCTTGAATTTGTGGATATGGAGGCTTACACTTATCAGTGTATGTAATTGC
TGGACCCCTGCATCTCTGCGATAAAGCCCACTTGACCATCGTGGATGATT
TATTTTTTTATGTGTTTTGTTATTCAGATTGCAAGCGCTTTACTGAGAAT
TTTTGCATCTATGTCCCTAGATGAAATTAAACCGTAACTCTATTCTCCTT
GTTGGGTCTTTGTGCGGCTTATGTATCAAGACAACTTTTGGCCTCATAAC
ATGAATTGGGTAATGTTCCTCCCGCCGCCATTTTGTGACATTTTTTAATA
CCACCTTTCTCACTCTTTTTCCGCTTATTTTTTTTTCACTCACTATTATC
GCACCTAATATTCCCCCCCCTTTTTTATTCTCCACCTCTACCTCCTGTTC
TCCACCATTCCTATCTTCCTTTCCTCTTCCCCCCCTATTTCTCTTCTTCT
GCCCTTTTTTTTTCATCTTTCTACCCTCCCCTTTTTTTCCCCACCTTCTC
TCTCCCTTTTTTTCTCCCCCCCCTTTCATTTCTCCTTTATATTTCCTCCT
CCCTTTTTTTTTTTTATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_d07.b1 MSMg01no454_d07.b1 CHROMAT_FILE:
MSMg01no454_d07.b1 PHD_FILE: MSMg01no454_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:19 2005
         (226 letters)



>mm_chr8_81360462_81361087
          Length = 626

 Score =  422 bits (218), Expect = e-122
 Identities = 224/226 (99%), Gaps = 2/226 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taataattaaaaagttaagttgctgtgttattctgcaatgaaaatgatttcatagtcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 taataattaaaaagttaagttgctgtgttattctgcaatgaaaatgatttcatagtcata 470

                                                                       
Query: 61  ggcatgtgaagatttttcatacattataattaaaataattaaatgatacaacagtatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggcatgtgaagatttttcatacattataattaaaataattaaatgatacaacagtatgta 410

                                                                       
Query: 121 agatacagtattaagaaacacataaaaggagtggctccaccttccaacactgtttttcct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 409 agatacagtattaagaaacacataaaaggagtggctccaccttccaacactg-ttttcct 351

                                                         
Query: 181 gggaatggtt-aaaaaaaaaaaagaagcaaattttgaaatactttt 225
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 350 gggaatggttaaaaaaaaaaaaagaagcaaattttgaaatactttt 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)