Query= MSMg01no454_j18.b1 MSMg01no454_j18.b1 CHROMAT_FILE:
MSMg01no454_j18.b1 PHD_FILE: MSMg01no454_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:51 2005
(246 letters)
>mm_chr8_74725798_74726443
Length = 646
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%)
Strand = Plus / Minus
Query: 1 gagaaaaatgtatgcttgctgtctcttaagaactagagtagccatgcagtggtggcgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagaaaaatgtatgcttgctgtctcttaagaactagagtagccatgcagtggtggcgcat 387
Query: 61 gccttagccttccccatcaaggaacccaaactgcagatttgcacagaattcacacacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gccttagccttccccatcaaggaacccaaactgcagatttgcacagaattcacacacagc 327
Query: 121 cttccatgggccttaaatgtctacataatttggaatagtgatgcaatgtggatgtcttat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttccatgggccttaaatgtctacataatttggaatagtgatgcaatgtggatgtcttac 267
Query: 181 acactggatcatttagggagatgagaggagcatcacacggtcagtacagatacatttcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acactggatcatttagggagatgagaggagcatcacacggtcagtacagatacatttcgc 207
Query: 241 tttttt 246
||||||
Sbjct: 206 tttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_j18.g1 MSMg01no454_j18.g1 CHROMAT_FILE:
MSMg01no454_j18.g1 PHD_FILE: MSMg01no454_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:51 2005
(413 letters)
>mm_chr8_74532633_74533445
Length = 813
Score = 746 bits (386), Expect = 0.0
Identities = 406/418 (97%), Gaps = 10/418 (2%)
Strand = Plus / Plus
Query: 1 tgctgttctagtccagcacacctctgtgcccagctccctgggctctattcaaggctcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgttctagtccagcacacctctgtgcccagctccctgggctctattcaaggctcttc 260
Query: 61 acaattccttttaccctgaaaccccagacccaccttattaccacactcaccaggcctagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaattccttttaccctgaaaccccagacccaccttattaccacactcaccaggcctagg 320
Query: 121 tgtcccaagatccagtttcgtttgggaggctgtgggaaacagcggaggcgaagagagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcccaagatccagtttcgtttgggaggctgtgggaaacagcggaggcgaagagagttc 380
Query: 181 tcaaaaacaccataaatcggggtcaggatgtaagccagaaggcaggaggccccagccagc 240
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaaacaccataaatcggtgtaaggatgtaagccagaaggcaggaggccccagccagc 440
Query: 241 aacagttttt-----gccatggagaggctgctgtgtggcccaggcccatccaggacatgc 295
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacag-----caacagccatggagaggctgctgtgtggcccaggcccatccaggacatgc 495
Query: 296 tcagctgtgacatcctgcagggcaaatgcacacaggatgaaatcctggggcatggaagag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcagctgtgacatcctgcagggcaaatgcacacaggatgaaatcctggggcatggaagag 555
Query: 356 ggacagtgtggtctagggcaaaggacagggatagggaattagagagttggggataatg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggacagtgtggtctagggcaaaggacagggatagggaattagagagttggggataatg 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
