Query= MSMg01no455_j04.b1 MSMg01no455_j04.b1 CHROMAT_FILE:
MSMg01no455_j04.b1 PHD_FILE: MSMg01no455_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:07 2005
(594 letters)
>mm_chr8_80953179_80954171
Length = 993
Score = 1118 bits (578), Expect = 0.0
Identities = 587/590 (99%), Gaps = 1/590 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggataccctgcttcaaaacaaaatgaagcaaatcaataagaaaataacattt 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattccaggaaaccctgcttcaaaacaaaatgaagcaaatcaataagaaaataacattt 734
Query: 65 aaagtaaaaagaagtaatagtatgtcgtaagtgtttttttttcaagttcagtttttgtga 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 733 aaagtaaaaagaagtaatagtatgtcgtaagtg-ttttttttcaagttcagtttttgtga 675
Query: 125 tttctttcccccagataattgaactggggtgtgataagctaaattgctttatttcaaact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttctttcccccagataattgaactggggtgtgataagctaaattgctttatttcaaact 615
Query: 185 tcagatgagtttattatttttttatgtattgggaaaagtcttgaggagggcgggacaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcagatgagtttattatttttttatgtattgggaaaagtcttgaggagggcgggacaaga 555
Query: 245 tcaatgaagaacaaaagtcccaccttatttttataaaacattctgtttagagggtaaccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tcaatgaagaacaaaagtcccaccttatttttataaaacattctgtttagagggtaaccc 495
Query: 305 tccaactttctaggcaggtcatgataaagacgtagaaacttgtttctgtaattatttggc 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 494 tccaactttctaggcaggtcatgataaagacttagaaacttgtttctgtaattatttggc 435
Query: 365 ctaagtgatgtctaattctaggcaaagaatttatactagaatactaaccttcactttata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctaagtgatgtctaattctaggcaaagaatttatactagaatactaaccttcactttata 375
Query: 425 ctgtagctggctgggaagggaggggctgccaccaaatgtagggctaggtggacactgctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctgtagctggctgggaagggaggggctgccaccaaatgtagggctaggtggacactgctc 315
Query: 485 ccatagagcaaagaggggacaaaggttggctgtgatgtccctgaaatccacatttgtcaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccatagagcaaagaggggacaaaggttggctgtgatgtccctgaaatccacatttgtcaa 255
Query: 545 gagacagatttatagcattgagaaaaatattgctaaatttcccctgcttc 594
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gagacagatttatagcattgagaaaaatattgctaaatttcccctgcttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_j04.g1 MSMg01no455_j04.g1 CHROMAT_FILE:
MSMg01no455_j04.g1 PHD_FILE: MSMg01no455_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:08 2005
(447 letters)
>mm_chr8_80769053_80769899
Length = 847
Score = 729 bits (377), Expect = 0.0
Identities = 426/457 (93%), Gaps = 26/457 (5%)
Strand = Plus / Plus
Query: 1 aaatgaagaatcctcctgtctcagctttccaaatttccaaatttactaggaagtgaattt 60
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgaacaatcctcctgtctcggctttccaaatttccaaatttactaggaagtgaattt 260
Query: 61 ctatttgtttatctacttacttgataattgagttatcaaaccattcatttgatcctacct 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatttgtttatctacttacttaataattgagttatcaaaccattcatttgatcctacct 320
Query: 121 gtatatatatacacatatgtacatatacatacatacatatat----------atatgtat 170
||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct: 321 gtatatatatacacatatgtacatatacatacatatatatatgtgtgtgtgtatatatat 380
Query: 171 atatatgtgtatattatatatatgtatctatacacacacacacacacacacacacataaa 230
|||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 atatatgt--atattatatatatgtatctatacacacacacacaca----------ta-- 426
Query: 231 cacacacacacactatggtatttcagtaattgtttaaaacattaaatgcagaagcatgat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 --cacacacacactatggtatttcagtaattgtttaaaacattaaatgcagaagcatgat 484
Query: 291 tgactggaaatggccaaattccaataacagattgtagaactacataatacagaaattaat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgactggaaatggccaaattccaataacagattgtagaactacataatacagaaattaat 544
Query: 351 ggacttttaatattcaacaagttttttttcttgttggtcttcttacttggctggcaggtc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggacttttaatattcaacaagttttttttcttgttggtcttcttacttggctggcaggtc 604
Query: 411 tgtttggtctgctgataggttggttggtttgagcagg 447
|||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgtttggtctgctgataggttggttggtttgagcagg 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
