Query= MSMg01no455_j06.b1 MSMg01no455_j06.b1 CHROMAT_FILE:
MSMg01no455_j06.b1 PHD_FILE: MSMg01no455_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:08 2005
(556 letters)
>mm_chr8_46444377_46445332
Length = 956
Score = 710 bits (367), Expect = 0.0
Identities = 391/399 (97%)
Strand = Plus / Minus
Query: 158 tctatataagtgtatgtatatatgtataaatgttcctaattacataaataaaatctgctc 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tctatataagtgtatgtatatatgtataaatgttcctaattacataaataaaatctgctc 897
Query: 218 ggtccatataacattacttcgatgtatatgattttaagactgaccatttgttagtggata 277
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ggtccatataatattacttcgatgtatatgattttaagactgaccatttgttagtggata 837
Query: 278 accatttgggggctctaccctgaggaaagctatttctccctctctcagcatttcttagtt 337
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 836 accatttgggggctctaccctgaggaaggctatttctccctctttcagcatttcttagtt 777
Query: 338 gcctgtagctctttgagggtaccaatactgggcatgctaacatgaaagggtgggggactc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gcctgtagctctttgagggtaccaatactgggcatgctaacatgaaagggtgggggacga 717
Query: 398 tcatggggcctcaaccttggtgtatttaagtttgatttttgtgcagatggaggttgcact 457
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 716 tcatggggcctcaaccttggtgtttttaagtttgatttttgtgcagatggaggttgcact 657
Query: 458 caggcctccagagaagcagtttaccacggatctgcgtaggtctagaactactgtttcatt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caggcctccagagaagcagtttaccacggatctgcgtaggtctagaactactgtttcatt 597
Query: 518 ccaggtataagtttgtgatatattgatatttaaaagtag 556
||||| ||| |||||||||||||||||||||||||||||
Sbjct: 596 ccaggaatacgtttgtgatatattgatatttaaaagtag 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_j06.g1 MSMg01no455_j06.g1 CHROMAT_FILE:
MSMg01no455_j06.g1 PHD_FILE: MSMg01no455_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:08 2005
(538 letters)
>mm_chr8_46280174_46281115
Length = 942
Score = 944 bits (488), Expect = 0.0
Identities = 528/544 (97%), Gaps = 8/544 (1%)
Strand = Plus / Plus
Query: 1 cccatcgaggaggaaaattatattgaaaattttcctggatgttcatgaattataaagagt 60
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cccatcgaggagg-aaattatattaaaaattttcctggatgttcatgaattataaagagt 259
Query: 61 taccaccaggctgtggactt-catatgtttctaggtatagtatttcatgtatttttgaga 119
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taccaccaggctgtgga-ttccatatgtttctaggtatagtatttcatgtatttttgaga 318
Query: 120 tgtacatctgaacttgaccctccaagttctgagttcattccttgggcaacttaaaggaca 179
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 319 tgtacatctgaacttgaccctctaagttctgagttcattccttgagcaacttaaaggaca 378
Query: 180 ctttccaagaccaagttaagaagattagtaatcaagcctgaatatttagaggctaattta 239
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 cttcccaagaccaagttaagaagattagtaatcatgcctgaatatttagaggctaattta 438
Query: 240 tttacacatataagtgaaagtattgatttgtcttaatgagaaaaaaaa-----gacatgg 294
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 439 aagacacatataagtgaaagtattgatttgtcttaatgagaaaaaaaaaaaaggacatgg 498
Query: 295 gtgggaagtaggtaggaactcaaataggaaaccaggttcaaataagagaaagccataaaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgggaagtaggtaggaactcaaataggaaaccaggttcaaataagagaaagccataaaa 558
Query: 355 aaaatatgtacacctaaaagctttatgcgtttaaatattgagtgtaaggtctctttagga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaaatatgtacacctaaaagctttatgcgtttaaatattgagtgtaaggtctctttagga 618
Query: 415 aaatgagctcttttgctacatataaagaatattaaggtgtgtatgaaggtagcatagtta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaatgagctcttttgctacatataaagaatattaaggtgtgtatgaaggtagcatagtta 678
Query: 475 gctcttagtaacagctgaatgactttggaaatgcccgctgttctgagaattaatgtaaaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gctcttagtaacagctgaatgactttggaaatgcccgctgttctgagaattaatgtaaaa 738
Query: 535 tgtg 538
||||
Sbjct: 739 tgtg 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 942
Length adjustment: 10
Effective length of query: 528
Effective length of database: 932
Effective search space: 492096
Effective search space used: 492096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
