BAC Information

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BAC

Clone NameMSMg01-455K04
Chromosome8 (Build37)
Map Location 63,913,881 - 63,914,447
singlet/doubletsinglet
Overlap genenone
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975
Downstream geneCbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455K04.T7 (MSMg01no455_k04.b1)MSMg01-455K04.TJ (MSMg01no455_k04.g1)
ACCAG542129AG542130
length7371,155
length of high quality
(start - end)
567 (66 - 632)---
definitionCHROMAT_FILE: MSMg01no455_k04.b1 PHD_FILE: MSMg01no455_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:12 2005CHROMAT_FILE: MSMg01no455_k04.g1 PHD_FILE: MSMg01no455_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAAT
TCTGATTCCCGCCGGAAGCTGTTGGAAAGTTGTCAGCTGACTTGCCATAT
GACGTTGGCTGCAGAGTGTAAAAGGCACTGCTGCAGCTCACGATAAGAAG
CAAAGATTGCACATGAGAAGTGGTAGAGCAACCTCACAATACTGTTCTTC
ACCAAAGAACCTAGACCCTAAGCAGGTTCCTGCTGAAATCCAGTGAGTCA
AGTCTAGAACACTGAAAGTGCCTGCAGCTGGTTTTCACTCACAAATAGAA
TCATCATAGCTTTGGAGTATCATGATTCCACTGTGTTCAGAATTGTGAGC
TCTGGAAAGATGCATCTTGACCCATCTGTCTTAAGTGTACCATGTAGAAG
CACTGTGAGATTTGTGAAAAATGTTAACAAGAGTCTAACCCTAAGCCATG
GAAAATTTATTGGTGAAAATGGTTCGTGATCCACTTTGTGTTCATGCCGG
CACTCGGGGCAGAACCCCACAAGAACATGTCACAATGTCAGTCTAGGTCA
GGATAATGGCTCAGCAGGTAAAACTCTATGTCACAAAAGCCCAACGATCT
GAGTTTGATCTTAGAGAACCTCGTTAGAAAGTTAAACAACAATAAAAGCC
AAAGCAGATGTGAACATCTCTAATACTAGCACTGCCACTGAGAGGTGCAG
ACACAGGGCAATCACCCATAAGCTTGTGGGCCAGCTN
CCTTCCTCCTGCGGTCATACCAATAATACTACAGTGTGTTTTTTTGTTCC
TTTCATACTTTTATCTTGATCGTGTAGGAAGACGCGCGGGCGCCCTTTCT
CCCCACAAATATCCCTGAAACCCATGGCGTTCCTTCTCCACTCTCGTCAT
GATCTCAGGTTATGCATTTTTCTTTCTGTGTCTGAAACTTTTGACTTCTA
TATTATTGCTATATTAAGCTGATAATCTCCATATTATAATTATTTATATA
ATTCAGCCTATTTTAGCCTCTCTCCAATTATTTTTTATTACAATAACTCC
AGCTATAGATAATATAGATACCACTAGAGATTATTATGCTAAATATCGGC
CGCTTATGTGTTGATGAGCGGTGTTTTATTAGGTGTGTGGTCATCTCTTT
GCCCATCGATCCTGCCCCCCATATTATGTTGTTACGTTATATTCGCTATG
TTCAGTACGCGTAGTGACGACACGTGCTATTGTGCCCGGCGACAAAAATG
TTGTGTTCTGGCTGTTCTAGGGTAGCTTTTCTAGTTTATTCAGTCAATAT
AACACTCATTTCCCACGTTAGTGTACTGTGGGAGCGGGTGACGACCGGAT
CCGGCAGAGGGTGCGGTGTTGATGCACTCGATGTACAACGATATCACGCC
GTACCATTATTCATTAGATCATAGTGACGGCGGCCCCGCCCGTTCATCAA
CTCCGTGTATACTTACGCGACGCGCTTACGCTTAAGGTATGTATACCTAA
TAATTTTCCATATTATTTAGCTCTCTCGTTATGTATTTTGTGGGGGCGCA
TCTTCACTACCCCCATAAGACAAGATGTCACTTCTTACATCGCGCGTCCG
CCGCCTCCCATTTATTATAGTATGCAATGTTGATTGAATAGTGCGTTTGA
TCTCGTTTTGCCCTCAAATACCTGACCAGATTATGTAGTTGATGCGTGTA
CATCACGCTTCTCTCATCTCTCATTATATCTTAAACCGCTAGGATCCCAC
ATTTACCCTCTCTATTTATCTCCGATCCCGATTGTTGCTTTATTTTATAG
TATGTGCCTTGTTTGGCTTTTCGCTGAGCAGAGAGTGTTAAGATTGTATC
AAAACCAATAAATTAAATTACAGATATAATTAATTTCATAAACAAACTTA
TATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_k04.b1 MSMg01no455_k04.b1 CHROMAT_FILE:
MSMg01no455_k04.b1 PHD_FILE: MSMg01no455_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:12 2005
         (567 letters)



>mm_chr8_63913758_63914724
          Length = 967

 Score = 1050 bits (543), Expect = 0.0
 Identities = 561/567 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagctgttggaaagttgtcagctgacttgccatatgacgttggctgcagagtgtaaaagg 60
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 690 aagctgttggaaagttatcagctgacttgccatatgacattggctgcagagtgtaaaagg 631

                                                                       
Query: 61  cactgctgcagctcacgataagaagcaaagattgcacatgagaagtggtagagcaacctc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 630 cactgctgcagctcacgataagaagcaaagattgcacgtgagaagtggtagagcaacctc 571

                                                                       
Query: 121 acaatactgttcttcaccaaagaacctagaccctaagcaggttcctgctgaaatccagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 acaatactgttcttcaccaaagaacctagaccctaagcaggttcctgctgaaatccagtg 511

                                                                       
Query: 181 agtcaagtctagaacactgaaagtgcctgcagctggttttcactcacaaatagaatcatc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agtcaagtatagaacactgaaagtgcctgcagctggttttcactcacaaatagaatcatc 451

                                                                       
Query: 241 atagctttggagtatcatgattccactgtgttcagaattgtgagctctggaaagatgcat 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acagctttggagtatcatgattccactgtgttcagaattgtgagctctggaaagatgcat 391

                                                                       
Query: 301 cttgacccatctgtcttaagtgtaccatgtagaagcactgtgagatttgtgaaaaatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cttgacccatctgtcttaagtgtaccatgtagaagcactgtgagatttgtgaaaaatgtt 331

                                                                       
Query: 361 aacaagagtctaaccctaagccatggaaaatttattggtgaaaatggttcgtgatccact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aacaagagtctaaccctaagccatggaaaatttattggtgaaaatggttcgtgatccact 271

                                                                       
Query: 421 ttgtgttcatgccggcactcggggcagaaccccacaagaacatgtcacaatgtcagtcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttgtgttcatgccggcactcggggcagaaccccacaagaacatgtcacaatgtcagtcta 211

                                                                       
Query: 481 ggtcaggataatggctcagcaggtaaaactctatgtcacaaaagcccaacgatctgagtt 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 210 ggtcaggataatggctcagcaggtaaaactctatgtcacgaaagcccaacgatctgagtt 151

                                      
Query: 541 tgatcttagagaacctcgttagaaagt 567
           |||||||||||||||||||||||||||
Sbjct: 150 tgatcttagagaacctcgttagaaagt 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)