BAC Information

Click to search

BAC

Clone NameMSMg01-455O12
Chromosome8 (Build37)
Map Location 90,360,985 - 90,361,217
singlet/doubletsinglet
Overlap geneZfp423
Upstream geneBC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
Downstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455O12.T7 (MSMg01no455_o12.b1)MSMg01-455O12.TJ (MSMg01no455_o12.g1)
ACCAG542334AG542335
length1,995774
length of high quality
(start - end)
---233 (369 - 601)
definitionCHROMAT_FILE: MSMg01no455_o12.b1 PHD_FILE: MSMg01no455_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:32 2005CHROMAT_FILE: MSMg01no455_o12.g1 PHD_FILE: MSMg01no455_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATGTGAATATATGAAGATGANNNNNNNGCCNCNNNCNNNNNNCNCTCC
TGCGTTCCTGTCTATTCATCTCATCTCCTCGACTAGCGTGCGAGCGCGCT
CGCGTGCAGCTGGCGCGGGGNGGCNTGTGTGTCGTCTCGCCATGTGGAGT
AGTGAGGGGTGCNGNNNCNGCANATATGGTTGACGATGATCTGCTGCGAA
CACGCGACGCGAGCGCGTGCCGCNGCGCTGACGACGTCTGTTCTNCGCGG
TCGTGCGGCTGTGTTGGCTGCTGTGATGCGNGTGNCTAGTGTTNATGTGC
ATACACATGGTTGCGTGTGGATGCAATAGAGAGAGCAGTGCGTGAGTGCC
TACGCTAGCTGTGACTCCTCATGATCATCNTACTATNCNGCTTCTGAGTT
GATGATCTGNGCTCGCCTACTAGTAGTCACTGCTGTAGTGTGATCGCTCG
CACATCGCAGCAGCCGCGCATCACGCGACGCGTATCACGAGGACGCGNGA
CGCAGNCAAAGAAATCAACGAATAACGGTACAGCGAGATGTTGTCATCTA
CGTCACTGCACGTAGTGCACCAGATGGATCACGTGTAGTTCATATATACN
CGATGGCTGCNTATATGACGATATCATACTGCGTACGCAGCTATCTATTG
GTCGCTATCTGTGATTGTTAACTATACTGCTCGCGCTGCTCACTGATCTG
CTGCTGCCGCTTAGACTTGCTATGTAGTCAGCAATTCGCACATGTNGACA
CAGCTAGCGCACNCANCACGCTGTAGAGTGCGCGTCAGATCAGCTCACTG
AGTGCGCAGTACTACGCGCCACGCTCACGNTCGCAGACTAATGCGACGNT
ATACGCTGCATACTGTGCTACTGCTACTACGTGCTACACGGCCAGAGGTA
CGCTCNTGTTTAGTGTACCACAGCTTGTAGNCGACTCTCGTAGNCGCGCA
NCANTGTCTCACCTCCGATTATACGATGCCGTCATACTGTAGGTAGTAGG
ACGCATNAGCGACNCTATAGTGTATAGTATCTGATAGTGCTGTCAGTTAT
ATGTATATGTATAGGTNGAGTATTGCGTGTGAGCAGGTCTGGCGCGATGT
CAGCGTACGACATGCTAGGTACGCTGGCGACTCATCGNACCCGTACTCTG
AAGTCTANAGACTCAATCNGATCACATTGCGTGTGCAGCTCACACACTCT
CACACTACACTCACCATGCACTCGATCACTCAGGCAGACTCTGCATGTTC
TTNGCATCGTNTCAGTGGGGCCGACTGCCGGCTCTAGTGCTNGCAGATCA
TANATCACGTGCGCTCTGCNGTAGTTANGCGCNGCTGATGATACTATATA
CGTACTGCATTAACTGATCGCGCCGTAGTANTTCATACTAGTATGCTCTC
GCGGCGCTGATCGCGCGTCGTGTCGCATAGGCGGTTACNTCTGCTCGCAC
GTGCCATTATATAGTGATGCACGATACGCGTGTATACGCNGCGATACTAT
TATTGTTGGTATNTGATATATGTTATCTACGCCNTACTACATCATAATGC
ATCGAGGATGTCCNACTCACAGTATTATCGTGTGTCCGACATATGTACAC
GCGCATGACGACGACCGTGCTACTCGCAGCTATATTGTCTCAGTCTAGAC
GCGCACGATNCTATCANGTCNTCGTATCGACACTATCTCATGTNTCACTN
ATATACGTCTCGGGTCGCGACCTGTGAGTANCTANTGTTATCGNTGTCGC
TTAGTGACGCGCTCGTTGACGCGCAGACATGGCTGATAGTTNGTAGTCTA
GNGTATGGGTGGTGACTGCGCGGTGCGACANTCTCCGTCGACTGCTCNCT
ACTTTATGTCATGATGACAAATCGTCGTCAGCCGNACCCTCACNGCNACT
GTTAGTTCANTGCGTAGTAGTTACTGGGNGTGTGCTCTCGTATCATCACA
GCNTCCCGGTNCAGNTNTGCCCGCGCTGCTGCTNCGGTGCCCCGN
TTTTTTTTTTACATTCCCATTTCCTCTCCTCTCTTTACAAATTCNNNCNC
CCTATGCTAGTGGGTAGCCGGGGGGGCGCCGTACAAAACAXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGCATTTTGGAAGTCCTGGTGGG
AGTCATTACTCCCACTGGAAGCTTTTTACAAAACATGTGTTGCTGACATG
TTGACAGATTGCTCAGTGAAGTGTTTAGGTGCATGCACAAGGCGGGCCTT
TGGAGACGCTCCGCGCTGCCAGCGAGTCTCCCAACGCTGGAACCTTTACC
ATCCATATTTCATAATGGGGGAGGCCGCTGCAGCTAGGGACTGGAGACGT
GTTCTCCACATCCTCATTCAGTCTCGCACCCCTCCGCCGAGGAGCACTTT
GAGTGGTCTGGCCCAGTCCTCGCCTTTGGAAGCTGGTCTGTGCTGCACAG
CTGTGACGGCCCTTGTATCCCTGCCAAGGGCTCTACTGAAGGAATCTTGA
AGCGACCTCACTGATCACTGCAAGGCAGCATACAGATCAAACCAAGGAGG
GGGCGGCAGGGAACCCCCCCCCACCTCCACCCCTGCCCTTGAGGAGGGCC
AGCATGGCAGGGAGGGGTTTGAACTCAGGCTTGCTGGTCTTGACAGCATG
AAGCTCATGAAAGTGATCTGTGACTTTAATATTGTTTTACGGCTCAGAGG
AATTACCTGCCTTAGCGATCGTTTGTTCTTGCTTTTTTCTCCCTCTCCTT
CTCTTGTAATTTTTCCCTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_o12.g1 MSMg01no455_o12.g1 CHROMAT_FILE:
MSMg01no455_o12.g1 PHD_FILE: MSMg01no455_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:32 2005
         (233 letters)



>mm_chr8_90360785_90361420
          Length = 636

 Score =  427 bits (221), Expect = e-124
 Identities = 229/233 (98%), Gaps = 3/233 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtctcgcacccctccgccgaggagcactttgagtggtctggcccagtcctcgcctttg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cagtctcgcacccctccgccgaggagcactttgagtgggctggcccagtcctcgcctttg 260

                                                                       
Query: 61  gaagctggtctgtgctgcacagctgtgacggcccttgtatccctgccaagggctctactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagctggtctgtgctgcacagctgtgacggcccttgtatccctgccaagggctctactg 320

                                                                       
Query: 121 aaggaatcttgaagcgacctcactgatcactgcaaggcagcatacagatcaaaccaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaatcttgaagcgacctcactgatcactgcaaggcagcatacagatcaaaccaagga 380

                                                                
Query: 181 gggggcggcagggaaccccccccc---acctccacccctgcccttgaggaggg 230
           ||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 381 gggggcggcagggaaccccccccccccacctccacccctgcccttgaggaggg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 636
Length adjustment: 9
Effective length of query: 224
Effective length of database: 627
Effective search space:   140448
Effective search space used:   140448
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)