BAC Information

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BAC

Clone NameMSMg01-456I24
Chromosome8 (Build37)
Map Location 103,656,119 - 103,656,465
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042078, LOC100042086, LOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456I24.T7 (MSMg01no456_i24.b1)MSMg01-456I24.TJ (MSMg01no456_i24.g1)
ACCAG542835AG542836
length750792
length of high quality
(start - end)
520 (46 - 565)347 (80 - 426)
definitionCHROMAT_FILE: MSMg01no456_i24.b1 PHD_FILE: MSMg01no456_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:25 2005CHROMAT_FILE: MSMg01no456_i24.g1 PHD_FILE: MSMg01no456_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCTTTCCCTAAACATGATAAAAGCAATCTAGAGCAAACCAGT
AGCAAACATCAAAGTAAATGGCGAGAAGCTAAAAGTGATTCAACTAAAAT
CAGGGACTAGACAAGGCTGCCTACTTTATCCCTACCTATTCAACATAGTA
CTTGAAGTCCTAGCCAGAGCAATTCTACAACAAAAGGAGATCAAGAGGAT
ACAAATTAGAAAGAAGAAGTCAAAATATCCCTATTTGCAGATGATATGAT
AGTATACATAAGTGACCCTAAAAATTCCACCAAAGAACTCTGAAACCCAT
TAAACAGCTTCAGTGAAGGAGCTGGATATAAAATTAGCTCAAAAAAGTCA
AAGGTCTTTCTCTACACAAACGATAAACAAACTGAGAGAGAAATTAGGGA
AACAACGCCCTTCACAATAGTCACAAAATAAAAATAAAAATAAAAATACC
TTGCAGTGACTCTAACTAAAGAAGTGAAAGATCTGTATGATAAGAACTTC
AAGTCTCTGAAGAATGAAATTAAAGAAGATCTCAGAATATGGAAAGATCT
CCCATGTTCATGGATTGGCAGGATCAATATAGTAAAAAAGGCTATATTGC
CCAAAAACATGGGGAGATTCCATGCCTCCCCCACCTAAATTTCCACTCAA
TTTCTCCCACGATTTATAAAAGGGAATTTTGGAAAATTCCCCCGGGAAAA

AATTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGTGTTCAGGGCAGCATG
TTTCCGTGAAATATTATGGGATAAGTACAATGATCCAATTTTACAGATAG
AGTATAAGATTTTGAATTGTGTCAACATGAACAATTGTACCCAGACACAG
AAGTTATAGTAACAAAATAAAAAAGAAAAAGGCATCAGACAGTATAGAAA
CCACAAGATCAACCTTATGTCATGTATTGTTAGATGTTATGACTCTTGAT
CTATTGCTAAATGTAACTATAGAATCTATATCAACTCTCCATGCTTCTAT
ATTGGAACTTGTACATTTCATTGTGGAAAATATGTAAGAATTCTGTTATA
AAAAATTTGTATTTACTTATAAGAAGTTCCAGTGTGTATTGTGGAGACTT
GGGAGCAGGCGACAGGTGCTTCTTCTTTTCCTCCCTTTCTTCCCTCTTTT
CTCTTCCTTCTTTTCTTTTTCCTCACTCTTTTCCTTATCTTTTCTTTCTT
TCCCTCTTTCTTTTCTTCTTTTCTCCCCCATTACCTCCCTCCTTCCTCTC
TTCTCTCTCTATTTTCCCTCCCTTTTTCTTTTCTTTTCCCTCCCTTCTTT
TCTCCTTCTTTTTATCCCTTCCTTCTATCTCTTTATCCTCTTCTTCTTAT
CCCCTCCCCTTTTTTTCCACTTATCCCTTTTTTTTCCCCTCTCTTTTCCT
TTCCCTCTTTTCCTTTTCCTTCTTATTCTTTTCTTTCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_i24.g1 MSMg01no456_i24.g1 CHROMAT_FILE:
MSMg01no456_i24.g1 PHD_FILE: MSMg01no456_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:25 2005
         (347 letters)



>mm_chr8_103655919_103656665
          Length = 747

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgtgttcagggcagcatgtttccgtgaaatattatgggataagtacaatgatccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgtgttcagggcagcatgtttccgtgaaatattatgggataagtacaatgatccaat 260

                                                                       
Query: 61  tttacagatagagtataagattttgaattgtgtcaacatgaacaattgtacccagacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacagatagagtataagattttgaattgtgtcaacatgaacaattgtacccagacaca 320

                                                                       
Query: 121 gaagttatagtaacaaaataaaaaagaaaaaggcatcagacagtatagaaaccacaagat 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagttatagtaaaaaaataaaaaagaaaaaggcatcagacagtatagaaaccacaagat 380

                                                                       
Query: 181 caaccttatgtcatgtattgttagatgttatgactcttgatctattgctaaatgtaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaccttatgtcatgtattgttagatgttatgactcttgatctattgctaaatgtaacta 440

                                                                       
Query: 241 tagaatctatatcaactctccatgcttctatattggaacttgtacatttcattgtggaaa 300
           || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataatctatatcaactctccattcttctatattggaacttgtacatttcattgtggaaa 500

                                                          
Query: 301 atatgtaagaattctgttataaaaaatttgtatttacttataagaag 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgtaagaattctgttataaaaaatttgtatttacttataagaag 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)