BAC Information

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BAC

Clone NameMSMg01-456L09
Chromosome8 (Build37)
Map Location 119,970,242 - 119,970,485
singlet/doubletsinglet
Overlap gene4933407C03Rik
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan
Downstream genePlcg2, 4632417N05Rik, Hsd17b2, Mphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L09.T7 (MSMg01no456_l09.b1)MSMg01-456L09.TJ (MSMg01no456_l09.g1)
ACCAG542949AG542950
length819779
length of high quality
(start - end)
---244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no456_l09.b1 PHD_FILE: MSMg01no456_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:37 2005CHROMAT_FILE: MSMg01no456_l09.g1 PHD_FILE: MSMg01no456_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCAAAATTGCGGCGCTAAACGACTCCTATACGGAGCGATCCGCGGAA
TTCACATTAGCAAGAAGGGAGGGAGGGAGGGAGGGAGGCACCCCCCCCCN
CANAACCCTTTTTGCCCCCCAAAAACGAAAAACCCACAACAAGAACACAC
CGCCCCATCTTCATTACAAGGGGACGAGTATACCCCCCTCATACCATTAC
CACTCTAGAAAAGAGAAAAGATATTAACAAGACCCCTAATATCAACAATT
TTTATTTAACCATACCCCAAGTTATCAGATGAAGAGCACACCATTTTCAT
AACCCCTAACAACAACAAAAAACTTTTTTTTCTTTAACCACAACACCGAG
CCGCCAACGAAGATCAACTATTTTTTTTCCCCCCAACCTCAGACAAGTGA
CCCGCACCATTACCCTATTCTTCATACTACTTTTTTCCCCCCCACATATC
CACAAAACCCTTTCCTTAACCTCACTTTCCCCCACCACGGCCAATCAAAT
AGTTATCATCCTAAATCACCACACTCCCCAACCCTTTATCCCCTTATTCC
ATTTACCCCATTCATCCAACTCATTCCCAAATCACATTTAATCTATATTA
CACAAATCTCACATCTCCCTTGCAACGACCCCGACAACCCCTTATTTCCC
CCCCCACTTAAACCCCACCATATAATAATAACACGCAAAAACTCTTTTAT
AATATCATCCCCTCCCATATCCCCAAACTCCACCACACTACTCCAACTAC
ACCCTCCTTTATCTACTAACATTCGTCACTTATTTTCCATCACTCTAGTA
TAACCCCCATCACAACTTG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTGCCGTAATCATGGGAAGCATCACTGTGCGTTGGATCA
CAACCTACAGAGAGCCTCTGCTCAGCCACGGGCCTCACATGCCTGCAGGT
CTGTTTTGACAGATTGGAAGCTGCTGGGCCTTGGGAGGCACTTGGGGCTC
TCTGCAGAGCCCATTAGTGAGCCTGTGTTTATGAATGCAGCTCCTCCGAG
GGGTACATTACACCCAGTAATTGCCCCATTTGCTGGCCGGCTAGTTCCCT
CGGGGCTCCCAAGAATGGTTACCGTTTAAATCTGACTCCTCAGAGCCTTC
TCTGTCTGTGGCATCATTGGTTACAGCACCTGTCCCCTCAGGCCCTGGTA
CCCGTTTGACAGTGGTCCATGATGCTATTCACTTGGAAGATTGCTCCCTG
ATTGTCTGCTATTGTGCGCTGTCCTTTTACCCCTTCCTTTTCCCAACTTG
CCTACTTTTTTATCCATTTTCTCGCTCCTCTTCATTCCTTTTGCCCTCTT
TTTTGCTCCTTCTCTCCTTCCTTTTTTCCCCCTTTTTTGCTCTCCACCTT
TTAACCTCCCTTTTTTTTTCTTTTTTTCCTCTCATCCTTTTTCCCATTTC
CCCTTCATTATACCTTTTTTCCTTATCTTCTTATCCCCTTTCCCACTTCT
TTTCTCCCCCCTCTCATTTCTTCACTATTTTATTTAACTCTCTTCCTATT
TTTCCTCTCCTTTCTCATTATTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l09.g1 MSMg01no456_l09.g1 CHROMAT_FILE:
MSMg01no456_l09.g1 PHD_FILE: MSMg01no456_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:37 2005
         (244 letters)



>mm_chr8_119970042_119970685
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggaagcatcactgtgcgttggatcacaacctacagagagcctctgctcagccacggg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atgggaagcatcactgtgcgttggatcacaacctacagagagcctcagctcagccacggg 260

                                                                       
Query: 61  cctcacatgcctgcaggtctgttttgacagattggaagctgctgggccttgggaggcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcacatgcctgcaggtctgttttgacagattggaagctgctgggccttgggaggcact 320

                                                                       
Query: 121 tggggctctctgcagagcccattagtgagcctgtgtttatgaatgcagctcctccgaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggctctctgcagagcccattagtgagcctgtgtttatgaatgcagctcctccgaggg 380

                                                                       
Query: 181 gtacattacacccagtaattgccccatttgctggccggctagttccctcggggctcccaa 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacattacacccagtaattgccccatttgctggccggctagttccctcggggctcccaa 440

               
Query: 241 gaat 244
           ||||
Sbjct: 441 gaat 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)