BAC Information

Click to search

BAC

Clone NameMSMg01-456O16
Chromosome8 (Build37)
Map Location 92,584,843 - 92,585,121
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456O16.T7 (MSMg01no456_o16.b1)MSMg01-456O16.TJ (MSMg01no456_o16.g1)
ACCAG543106AG543107
length7621,310
length of high quality
(start - end)
278 (69 - 346)---
definitionCHROMAT_FILE: MSMg01no456_o16.b1 PHD_FILE: MSMg01no456_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:54 2005CHROMAT_FILE: MSMg01no456_o16.g1 PHD_FILE: MSMg01no456_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCTTCCTGCAAGCCATGTTCGTTATCCTGAGGTTGTACAGATTGT
TGGCTACATACTCCAATAATTTAAAGCACAGTACTATTGTGTGCACATGT
GTGTCTTTCTTCTTTCAAGAGTTCACCTGGCATCCGGTGGGTCTGGTGCT
GCTAGGTATTCGAATGTTAAATACTGGTTCCCAAGATCTGTTTGCAGTCC
AGAGGAACACATACTCGTGTACACTGGCCTTTGTTGTGTAAACCTTGCCC
CCCAATTTATTCTATTGGTTAATAAAAGGCGAGAGCCTGGGATTGGGCAG
TATATAGAAAAAGGAGAGACCTGAGAATTGAGTGATGGGCTTAATAGAGA
CCACAGGACCCCCATGGGCTTGGTAGAGAAGGGAAAACAATACAGAAATT
ACAGGAGGTCTCCATTAGATGATACGGACCAGTATCTCATGTTCCATAGT
AGTACAGCATCCTGAGGACAGATTGAGGGATCATACGTATTCCTCACACG
TTAATTATATAGGTGTATGTGGTTTGCATAGAGGTAACTTTATTTTTCAA
TTTTTTCAATTTTGCCCTCAATGATTCTTCTTTTTTTTTTTTTTTTTCTT
CCGTTCCCTTTTTTTCGATTTTTCTCCTCCCATTTACCCTTCCGCTCTCT
CTTAATTCCTTCCTTCCTTATTTTCTCCTTTTTTTCTCTATTTTCTCCGC
CTCCTTTTTCCT
ATAAATATATAGGCACCCCNNNCNCGCCGGTACGNCCGCGTCTTCACAAC
ACAATAGAGGTGAGAANNAAAGAAAATTATCTCCCAAAACAAAGTCGCGA
TAATGACCCCAGATTACACTCATCAAATGCAGCCGAGAATGACACGGAAT
ACTCTTCTCGACCCGCCGTCTTCATCCTGTCCCAACACTCGCTCTCGCGA
TTCTTCGCTCGTTACTCTCCGTTCTTGCTGCACTTGTTGTCCTACTTTCT
AACCGCTTTGCATCACATTGTTAGGTGATTACTGCTGACATTACATCATC
TCCTACCCCCTCACGATACCCTCTTCACTCACACAATATATCTTTAATTG
CAGCTTTTATATTTATGCGTTGCGGACTTAGCCTGTCCTGCTGTGCACCC
TTGTTTGGTGTTCTCTCTAAACCCTTCCTACCACACACCTTCACACTAAA
CTAGCACAATGTCTTATTTTTCTTTTTAATCTCTTGACACAATAGGAGTA
ATCCCTAGGCACTTCTGTAGATGGGATGTGTACCTTAGCGCCTTACCATT
CCTCACTCTATATCTCATATTTGTCGCAATTTATTTCTCCTCTTCTAAGA
CCGTTACGCCCGCACTGTCCCCATCGTGTACCGATATGCGCCCCACCGAT
CAGTAGCGCATCCCGTATGATACTACGTAATATTTCGACATTACACCCTC
TTTGACCCTGGACACTTATATGACACCTCTGTTCAGTGTATCGCGTAGTA
TCTGCGTGATCAACTCCGATTTCCGTATACTTGCCGTCTCTCCACAAGCA
CACTTGAGTAGAGTTACATCCGATCGACGATCGTGTGTCTCTACCCTTTN
GCGTACGCATACATATGCATATATAACACTATGCCCCTCCTACAATCCTT
CTTATATAAAATTATGACTATATTTATACACCACGTAGCATATACACAGC
TTAGACACATATGCATTGCACGCAAGTATGTGTTCATCGATCTGGCGTAA
GTATGTCCACCCACTCTCACGATGTCATCACGTGTTACCGTTCTCACACC
ACCCGACTCGTCCTCGTTCTTGCACCGCTCATACTGTTTCGCGTCCGCGT
GTCACAATGATCAGACACTTCATATGATCGCCAGACGCTCTCGACACACT
TATACACACCCGTTGCGATAGCTAGCGTTGTTGTCACTCCTCGTATAGCG
CGCTCGTGAAACCGATTCCGCNACGCTACGTAGCGACACGGCTTACCACA
CTACATAACCGGATATTCGCGGTGCGCATGCAGTATAATATATGCTCTAC
CGTGCGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_o16.b1 MSMg01no456_o16.b1 CHROMAT_FILE:
MSMg01no456_o16.b1 PHD_FILE: MSMg01no456_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:54 2005
         (278 letters)



>mm_chr8_92584643_92585320
          Length = 678

 Score =  509 bits (263), Expect = e-148
 Identities = 275/281 (97%), Gaps = 5/281 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgttcgttatcctgaggttgtacagattgttggctacatactccaataatttaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgttcgttatcctgaggttgtacagattgttggctacatactccaataatttaaagca 260

                                                                       
Query: 61  cagtactattgtgtgcacatgtgtgtctttcttctttcaagagttcacctggcatccggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtactattgtgtgcacatgtgtgtctttcttctttcaagagttcacctggcatccggt 320

                                                                       
Query: 121 gggtctggtgctgctaggtattcgaatgttaaatactggttcccaagatctgtttgcagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gggtctggtgctgctaggtattcgaatgttaaatactggttcccaagatctggttgcagt 380

                                                                       
Query: 181 ccagaggaacacatactcgtgtacactggcctttgttgtgtaaaccttgccccccaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaggaacacatactcgtgtacactggcctttgttgtgtaaaccttgccccccaattt 440

                                                    
Query: 241 att---ctattggttaataaaaggcgagagcctgggattgg 278
           |     |||||||||||||||||||||||||||||||||||
Sbjct: 441 a--aagctattggttaataaaaggcgagagcctgggattgg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)