BAC Information

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BAC

Clone NameMSMg01-457G15
Chromosome8 (Build37)
Map Location 45,889,049 - 45,889,463
singlet/doubletsinglet
Overlap geneLOC100039508
Upstream genenone
Downstream geneFat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457G15.T7 (MSMg01no457_g15.b1)MSMg01-457G15.TJ (MSMg01no457_g15.g1)
ACCAG543487AG543488
length748750
length of high quality
(start - end)
213 (253 - 465)480 (84 - 563)
definitionCHROMAT_FILE: MSMg01no457_g15.b1 PHD_FILE: MSMg01no457_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:36 2005CHROMAT_FILE: MSMg01no457_g15.g1 PHD_FILE: MSMg01no457_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTCTTCTCTAACTCATTCAGTGTTTTCCCAGCTCTTAGCCTG
TGTACTTAATGCTACACGGCACACTAAGATACAATTAGAATTATCAGCAG
GCATCTCTCCTGGCCTGCACAGGCTAGTTCTCTGCTTTGTGTCGTACCAC
ATGACTAATACCAGCACTCAGGAGAATTGGGGCAGAGGGATCATGAGTTC
TAGGCCAGTCTATGCAACACAGCAAAACCTTTTTGCTATGTTGCTGTTGT
TGTTGTTGCTGCTGCTGTTGCTGCTACTGTTGTCTGTTGGTTTGTTTTCA
AAAAGGCCAGACTCTGAAACAGAGGGAGAGATAAAAGAAAGCAGGGGCAG
AAGATATCTTAGTCAGTGTTCTATTGGTATAAAGAGACAGCCAGATCACA
GTGTTTAACTGAGGCTGACTTACGTTTTCAGAGATTCAGTCCATTATCAT
CCTGGAAGGGAGCATGGTGGTATGCAGGCATACATCATGGCACTGGAGAA
GTTTTATAGTCCTACATAAGGATCTTTCCTCCGAATAAAGACAGAGAGAG
AGATATACAGATAGAGAGATATATAGATATAGACATATATTATATAGATA
CTCCTCTTGTCTTGATCTTTTGATAACCCCATTGATGTATTCTTCTTTAC
AAAGGTCCCATTTTCCTATTGCCCTTCCTGCATTCGTTATTTCTTTTG
TTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGACTCCAAGTGTGA
TGATTTGTATCTGCTCGGCCCAGGGACTGGCAGTATTAGGAGGTGTGGTC
TTGTTGGAATAGGTGTGTCACTGTTGAGTCTGGGCTTCAAGACCCTTATC
CTAGCTGCCTGGAAGCCAGTATTCTGTAGAACTCTCAGCCCCTCCTGCGC
CATGCCTGCCTGGATGCTACCATGCTCCCACTTTGATGATACTGGACTGA
ATCTCTGAACCTGTAAACCAGCCCCAATTATTTGTTGTTAATTAAAACCC
TAACTAATATTTACCAAGAGTCTCCTGCCATAATCTGAGTAAATTAGCAA
GTGAATCAATTAGCTTTCCAGTGTGGACATCCAGGACACTGTGCCTAGGG
CAACTTTAAAAAAGCATAACCTTAGATTTGAATACCAGTTGCCTTAGCTA
AATATCTTGATTTGGCTGCCACTTCCTCTAACAGTTCTGTTGCTGTTATT
TTGAGGGCTATTAAAAGAATGTGTATTCTGATTTTTTTCCCCCCATAGCC
TTAAGCTCTTTGTAATAAATACCTTTGTCTGTACCCATGTACTTCAATCT
AAAAGGTGTGCCCCCTTTTTTCCTGATAAATCTTTTTCCCCTTTTTACTT
TTTCCTTTAACAAACATTAACAATTTTACTTTTTTTTCTTGTTTTTCTAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_g15.g1 MSMg01no457_g15.g1 CHROMAT_FILE:
MSMg01no457_g15.g1 PHD_FILE: MSMg01no457_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:36 2005
         (480 letters)



>mm_chr8_45888594_45889469
          Length = 876

 Score =  768 bits (397), Expect = 0.0
 Identities = 412/419 (98%), Gaps = 4/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 60  gtgtggtcttgttggaataggtgtgtcactgttgagtctgggcttcaagacccttatcct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gtgtggtcttgttggaataggtgtgtcactgttgagtctgggcttcaagacccttatcct 811

                                                                       
Query: 120 agctgcctggaagccagtattctgtagaactctcagcccctcctgcgccatgcctgcctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agctgcctggaagccagtattctgtagaactctcagcccctcctgcgccatgcctgcctg 751

                                                                       
Query: 180 gatgctaccatgctcccactttgatgatactggactgaatctctgaacctgtaaaccagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gatgctaccatgctcccactttgatgatactggactgaatctctgaacctgtaaaccagc 691

                                                                       
Query: 240 cccaattatttgttgttaattaaaaccctaactaatatttaccaagagtctcctgccata 299
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 690 cccaattaaatgttgttaattaaaaccctaactaatatttaccaagagtctcctgtcata 631

                                                                       
Query: 300 atctgagtaaattagcaagtgaatcaattagctttccagtgtggacatccaggacactgt 359
           |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 630 atctgagtaaattagcaagtgaatc----agctttccagtgtggacatccaggacactgt 575

                                                                       
Query: 360 gcctagggcaactttaaaaaagcataaccttagatttgaataccagttgccttagctaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gcctagggcaactttaaaaaagcataaccttagatttgaataccagttgccttagctaaa 515

                                                                      
Query: 420 tatcttgatttggctgccacttcctctaacagttctgttgctgttattttgagggctat 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tatcttgatttggctgccacttcctctaacagttctgttgctgttattttgagggctat 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 876
Length adjustment: 10
Effective length of query: 470
Effective length of database: 866
Effective search space:   407020
Effective search space used:   407020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)