BAC Information

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BAC

Clone NameMSMg01-458A06
Chromosome8 (Build37)
Map Location 3,237,307 - 3,237,529
singlet/doubletsinglet
Overlap geneInsr
Upstream geneEG664801, EG209786, D630014A15Rik
Downstream geneA430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458A06.T7 (MSMg01no458_a06.b1)MSMg01-458A06.TJ (MSMg01no458_a06.g1)
ACCAG543944AG543945
length793745
length of high quality
(start - end)
180 (76 - 255)223 (336 - 558)
definitionCHROMAT_FILE: MSMg01no458_a06.b1 PHD_FILE: MSMg01no458_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:28 2005CHROMAT_FILE: MSMg01no458_a06.g1 PHD_FILE: MSMg01no458_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAACTTATAATTGCGGCGCTAAACGACTACTATAGTCGCAGTTCGAC
GGAATTCTCTCTCTTCTACTCTAACTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCAAACTCCTTTGAATTTGT
TCTCTTACCTCACTAGTTTGATGAAGTCATAAAAATAGTATTACCAAGAT
TGGATGAAGCTGGGGCCCATTTGAGAATTCAGTGTTCTCCAAGTGGATCG
AGCTTCGCTTTCCCTCCTCTCCCTCAACCAAATGCCTGAGAGCTCTCTGT
TTCATCACTTCCAGGTATCTCTGTGTTTTTTTTTTGTGTCTGCCCACTCA
TAAAGCATCCAAAATGTTCTGACGAAAGTCAGTCTGGTATCTACGGCCGT
GGCTGTCATTTGTCTTGTAGACCCCCCCGCATCTTCTTGTTTGCCCCAGG
ATCCTCTGTGAGTCTCCCTGAGCTTCAGCCCTTATTCCCACTTACTTCCT
CATATTTCTGTCAGTTGACGCTTGACATTATATATATTCCATCTGTTCAA
TATTATCACTAGTTCTATTGGTTGTCCACTCTCTCTTCGTTTTAAATACT
TAAAGACTATTTCTTCTTTTTTGTTCATCTTTCTTTAGTGGAATTTTTTA
TATCTGTTTCATCCCCATTTTTTCTTATTATTACAACGTTCTGCCTAATT
TTATATGTAATGTTCTCACGGCTTTCTATACAACACTTTTATTTTGTCTT
TCCTTCATCTAGCTTGGGCTTTATTACTTTCCTTAATATAATG
TATGCCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACAAA
TTGAGGNNGAACTATAGAAGTTACAGCAAAAATTCTAGCTTTTGAACAAA
CGCTTCTTTTCCTTTCTGAAGCAGCTTCCCCTAAGTTTTTCCTTTTTATG
GTGCTTCTACAGTGTTCCAGGGTGATCTCCTCGGTTCTCAATGGCTTGAG
CCTTACCAAGTTAGTGAGTTATTCTGAGTTCTGGAATCCAGCATCTGGTG
CAGCTTGTGTCTCTTGGCTTTGACCTAGGAGGTTGTGCCAGCCAAAGGAG
GTGGCTTCCCCGTGCCTGGGGGCCTTTCCTGTTTGCTGCAAGCTTTTAAA
GGCCATGGCTTGTGCTGTAGACATGTGTTCCTCTGGCACTGGCTTTGTTG
AAAACACATTCCCTAGATAGTTTCTTTTCTACACAGACGTTTGGAGATTC
TTGGGTGTGCTAGAGGCATCCTCTCTCTCCGTCTCTCTCTCTGTCTCTGT
CTCTCTGTCTCTGTCTCTCTGTCTCTCTGCCTCTGTCTGTCTGTCTGTCT
GTCTGTCTGTCTGCCTGTCTCTCTCTCTCTCTCTCTCTGTGTGTGTCTTC
TCTGTACAGTGCATTGTATTGTTGTTTTTTATTTTTGCAATTTGATGTGC
ACCTAATGTGTTATTTTGTTTTTTTGCACCTCATCCCGTTCCCCCTCTTA
CTTTTCCTATTTCGCACGGAATGTTTTAAACCCCCTTCTTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_a06.g1 MSMg01no458_a06.g1 CHROMAT_FILE:
MSMg01no458_a06.g1 PHD_FILE: MSMg01no458_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:28 2005
         (223 letters)



>mm_chr8_3237192_3237814
          Length = 623

 Score =  389 bits (201), Expect = e-113
 Identities = 216/223 (96%), Gaps = 4/223 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcaagcttttaaaggccatggcttgtgctgtagacatgtgttcctctggcactggctt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 338 ctgcaagcttttaaaggccatggcttgtgctggagacatgtgttcctctggcactggctt 279

                                                                       
Query: 61  tgttgaaaacacattccctagatagtttcttttctacacagacgtttggagattcttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgttgaaaacacattccctagatagtttcttttctacacagacgtttggagattcttggg 219

                                                                       
Query: 121 tgtgctagaggcatcctctctctccgtctctctctctgtctctgtctctctgtctctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tgtgctagaggcatcctctctctccgtctctctctctgtctctgtctctctgtctctgtc 159

                                                      
Query: 181 t----ctctgtctctctgcctctgtctgtctgtctgtctgtct 219
           |    |||||||||||||||||||||| ||||||| |||||||
Sbjct: 158 tgtctctctgtctctctgcctctgtctctctgtctctctgtct 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)