Query= MSMg01no458_b06.b1 MSMg01no458_b06.b1 CHROMAT_FILE:
MSMg01no458_b06.b1 PHD_FILE: MSMg01no458_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:33 2005
(430 letters)
>mm_chr8_55698102_55698930
Length = 829
Score = 739 bits (382), Expect = 0.0
Identities = 412/428 (96%), Gaps = 12/428 (2%)
Strand = Plus / Minus
Query: 5 gaattctcaacttttttcttctcacttggcccctctactggggctaagagtgctatctga 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaattctcaactttgttcttctcacttggcccctctactggggctaagagtgctatctga 654
Query: 65 gactctggacataattaaacctgcctcaatcttgcctttttcttacctctgagacacact 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 653 gactctggacataattaaacctgcctcactcttgcctttttcttacctctgagacacact 594
Query: 125 cctacaggctcctgatttgcctctcacaggcctttat----------ctatttatactac 174
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 593 cctacaggctcctgatttgcctctcacaggcctttatcaaccatttactatttatactac 534
Query: 175 taaaaaatggggaatggttctggtagtctttggacagatgagaggaatcacctttgtccc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 taaaaaatggggaatggttctggtagtctttggacagatgagaggaatcacctttgtccc 474
Query: 235 tgttacctatctttccagagagctatacacaaacattagggggtggctaccctgcctatg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgttacctatctttccagagagctatacacaaacattagggggtggctaccctgcctatg 414
Query: 295 ggcacaagtagtagcctcccttactactccaagaagcatctaaactcatttttggcatct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggcacaagtagtagcctcccttactactccaagaagcatctaaactcatttttggcatct 354
Query: 355 ctctctctctctctctctctctctctctctctctctctctctctctctctctctctc-tc 413
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 353 ctctctctctctctctctctctctctctctctctctctctctctctctctccctgtcatc 294
Query: 414 tctctctc 421
|| |||||
Sbjct: 293 tc-ctctc 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space: 345220
Effective search space used: 345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_b06.g1 MSMg01no458_b06.g1 CHROMAT_FILE:
MSMg01no458_b06.g1 PHD_FILE: MSMg01no458_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:33 2005
(554 letters)
>mm_chr8_55534828_55535781
Length = 954
Score = 971 bits (502), Expect = 0.0
Identities = 541/554 (97%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 1 ttttgagtcccatgcaaactggaagtaataatgaaaaaccaagattaaaaaaaaaaaaag 60
|||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 203 tttt-agtcccatgtaaactggaagtaataatgaaaaactaagatttaaaaaaaaaaaa- 260
Query: 61 aaaaagaaaaacgttgaagaaagtaagacatttcggtgtaaggcactcccatcaaaatgt 120
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ataaagaaaaacgttgaagaaagtaagacgtttcggtgtaaggcactcccatcaaaatgt 320
Query: 121 gtaattaacagtagtaactagcatttgggatgctagatagtccagtctgcccttatgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gtaattaacagtagtaactagcatttgggatgctagatagtccagtctgaccttatgcca 380
Query: 181 agatcatggaacagaatatggttgtgtggtaaatataatctgggccacacataagaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatcatggaacagaatatggttgtgtggtaaatataatctgggccacacataagaactg 440
Query: 241 attatgtcagattgtattaactgtctgtccaagccacactgggaaatgaggcatctgctg 300
|| | | |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 atcaagccagattgtattaactgtctgtccaagtcacactgggaaatgaggcatctgctg 500
Query: 301 tttcctgattctaacagtttggggattcccagataaaaagatgtgtcattacaatcttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcctgattctaacagtttggggattcccagataaaaagatgtgtcattacaatcttgt 560
Query: 361 ggtgtagacaggggagggcatgactcagccaaagcaatctttggactttccctccactga 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgtagacaggggagggcatgattcagccaaagcaatctttggactttccctccactga 620
Query: 421 agaacctctgggaaggcttcctggatgctaaactcagtaatccttaaaactgacatcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaacctctgggaaggcttcctggatgctaaactcagtaatccttaaaactgacatcagc 680
Query: 481 tgttcctctctctgagcatctggagtcatgtctcttccctaaggagacaccaacagatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttcctctctctgagcatctggagtcatgtctcttccctaaggagacaccaacagatca 740
Query: 541 agtcaaacatgcac 554
||||||||||||||
Sbjct: 741 agtcaaacatgcac 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
