BAC Information

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BAC

Clone NameMSMg01-458K10
Chromosome8 (Build37)
Map Location 81,351,497 - 81,351,756
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6
Downstream geneEG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458K10.T7 (MSMg01no458_k10.b1)MSMg01-458K10.TJ (MSMg01no458_k10.g1)
ACCAG544430AG544431
length745736
length of high quality
(start - end)
260 (333 - 592)290 (328 - 617)
definitionCHROMAT_FILE: MSMg01no458_k10.b1 PHD_FILE: MSMg01no458_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:18 2005CHROMAT_FILE: MSMg01no458_k10.g1 PHD_FILE: MSMg01no458_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAACACCAG
GCGCGGAATTCCTATTTCTTCCATAAACTAATAGGCCAACAGCATTTTTA
TTGACAGGTGATGCATCAATACAGTACACACGATGTTCTCTTTTTTTCTG
TATTTATTTTTATTAGATATTTTCTTTATATGCATTTCAAATGCTATCCC
AAAAGTTCCCTATACCCTCCCTCCGCCCTGCTCCCCTACCCACCGACTCC
TGCTTCTTGTTCCTGGCATTCCCCTATACTGGCACATATAAAGTTTGCAA
TACCAAGGGGCCTCTCTTCCCAGNGATGGTCGACTAGGCCAACAAGATGT
TCTCTTTACATGGCACCACCTACAGTGGGCTGGGCCCTCCCTCCCCACAG
GTCAGACTAATGACAGCATTTTCTGAATGGTGCTTTCCTCTTCCCAGATG
ACTCCAGCTTGTGTCAAGTTGGCAAAACTAACCAGCATAGCTGTACAGTG
AGAACTTGTCTCAAAAGCCTAAAAGATGGGCGAGCTAGACAGCTCGGTAA
GTAAACACCACACCACAAGCCTGACGGCCTGTGAGGAGCATAAAGGAAGA
AGGTAGAGCCAGCCACAGTTTCCCTGTGACTACTGGATGCTGTGACACTC
CCTACCCCCACTGTCAATAAGGACAAGCACCCACGAGGTTAACAACCATA
ACTACCATAATAACCCCAGCCTTACTTTTTTAAATGAATAATAAA
GGACGATGCTAGGGGTAGGGCTGGGGGNCGCCTGTTTCTTAACTTTAGGT
GAACTATAGAAGTAACAGCAAACATCTTTACTATGTTGAGGTCTGTCTCT
TGAATCCCTAGTTTTTGTTTTTCCTTTTTCAGGACTTTTATCATGAAGAG
GTGTTGCGTTTTGTCAAAGGCCTTTCTTGAATTTGTGGATATGGAGGCTT
ACACTTATCAGTGTATGTAATTGCAGGACCCCTGCATCTCTGCGATAAAG
TCTTATTTGACCATCGTGGATGATTTATTTTTTTATGTGTTCTGTTATTC
AGTTTGCAAGCGTTTTACTTAGATCNNTTGCATCTATGTTCATAGATGAA
ATTAAACCGTAATTCTATTTTCTTTGTTGGGTCTTTGTGTGGCTTAGGTA
TCAAGATAACTTTTGGCCTCATAAAATGAATTGGGCAATGTTCCTCATGT
TGCTATTTTGTGAAAAATTTGAGGAATATTGGTGTTAAGTCTTCTGGAAG
AATTCTGCACTAATACTATCTGGCTCTGAGCTCTTTTTGGCTGGGAGACT
TAATTCCTACTCTTGTTTCACCAGGAGCTATAGGTCTGTTCAATTTGTTT
ATGTGATCTTTTGGGTAAGTGATATATATTAAGAAAACTATCCATTTTTG
CTACTTTTTTTTTTTGTGGCGGAACACACACTTTTACAGTATGCCTCTAC
TATTCTCAGAATTTCCCTTGGTGTCGGTTGTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_k10.b1 MSMg01no458_k10.b1 CHROMAT_FILE:
MSMg01no458_k10.b1 PHD_FILE: MSMg01no458_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:18 2005
         (260 letters)



>mm_chr8_81351140_81351799
          Length = 660

 Score =  495 bits (256), Expect = e-144
 Identities = 259/260 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaggccaacaagatgttctctttacatggcaccacctacagtgggctgggccctccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 actaggccaacaagatgttctctttacatggcaccacctacagtgggctgggccctccct 558

                                                                       
Query: 61  ccccacaggtcagactaatgacagcattttctgaatggtgctttcctcttcccagatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccccacaggtcagactaatgacagcattttctgaatggtgctttcctcttcccagatgac 498

                                                                       
Query: 121 tccagcttgtgtcaagttggcaaaactaaccagcatagctgtacagtgagaacttgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tccagcttgtgtcaagttggcaaaactaaccagcatagctgtacagtgagaacttgtctc 438

                                                                       
Query: 181 aaaagcctaaaagatgggcgagctagacagctcggtaagtaaacaccacaccacaagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaagcctaaaagatgggcgagctagacagctcggtaagtaaacaccacaccacaagcct 378

                               
Query: 241 gacggcctgtgaggagcata 260
           ||||||||| ||||||||||
Sbjct: 377 gacggcctgggaggagcata 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)