BAC Information

Click to search

BAC

Clone NameMSMg01-458N04
Chromosome8 (Build37)
Map Location 8,586,202 - 8,586,614
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039836
Downstream geneEfnb2, 9430010O03Rik, Tmem28
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458N04.T7 (MSMg01no458_n04.b1)MSMg01-458N04.TJ (MSMg01no458_n04.g1)
ACCAG544562AG544563
length840779
length of high quality
(start - end)
---434 (71 - 504)
definitionCHROMAT_FILE: MSMg01no458_n04.b1 PHD_FILE: MSMg01no458_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:31 2005CHROMAT_FILE: MSMg01no458_n04.g1 PHD_FILE: MSMg01no458_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCACTCTTTCTATTATGTCATTCTTATGAGAGATAACCGCCCCCTCCC
CCTTATAAATAATCCTTTTATACAATTTTCCCCCCNCCTCCGCGTTCTCG
TTGTTACACTAACATCAGAGAATTAGTAGTTACCACTACTCTCCCAGACG
ACACAATCTATCTCACAACAAATAAAAATATTATAAATACAATCAGACAG
GCCGGGCGATTCTAACCCCCCTCCTCCACTCCTTTATTCTTTCTTTTATT
TAACCATAAACACAAACAATGNGGGGGGTTTAACGAACNNTCACNTTACT
TGGCGTGCAAAAAAAAAAAAAGGAGAGTCCCCCGGGCCGGGNNNAAAAAT
NTTCCTTCCAAACTTTTTTACCGCAAATAATTAATAATGGGGCCTGAAGA
AAAGCCACAATGGAAAAGAAAAAATGGTTCCAAACAATCCCCTTAAAAGT
CCAATCCAGAGGGGAAAAAAATCCAAAAAAATTTCCCAATTCCCCCTATA
AAAAGGGGGCGACAACAATAGTAGAAAAAAAAAAGCTCTTCCTCCNCTCC
CAGGGAAAAANAAAAAAAAATAAACTTGTTTGTCGGCGCTGCCAGACCCN
CNNGAGCNATGTNTTATAGTTGTGNTTTCAAAATATTTTTTTTTTTTAAA
AAAAAATAAAAAAAGGTTTTATGTGGGGTGTTCACCAAAAAAAAAAAATT
TTTTTTTTTTTTTGTGTGGTAAAAAAAACCCCCCCCCCCCCCCCCACAAA
AAAAAAAAATAAAAAAAATTTCCCCCCGCGCCGGGCGGGGGGGCCGAAAC
AATCAATTATTTATTTTTTTCTTATTAATCAACAAGAAAG
CCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTACGCGAAATTCTCCCATGCGCCCAACGGTTTTGGTT
CAGAAACCATCTGGGTTTTAGAAGGGACCCGACAGCACCAGGCTGTGACA
CCCAGGGGAAGGTGACAGGCCTGAGATAGCTCTCTTCCTCTCTTGGAAGT
AGAGGGCACTATTAAGGGATCCAGAATGACTCTAAGGCTGAGGCTGCTCC
AGGCAACCCCGCCGTGTGTGGGATCTGAGCTTTCCCATTCCATACAGAGA
AGAAGGCTTTGCAGCCAGCATTTATTTGAAGGGGGTCGGGGGCGGGGGGG
GGGGGAGACCCAACCCTAGAGTATCTCAGAGCTGTTGGGAGTAGAGAGAA
GGTATGCATGCTTCATCCTGGACTCACCAGCTACTTTGGACAAGACCCTT
CCTGTCCACTTCCACGTGCATGCTGACTTCAGCAAAACACATCTCTCATC
AGTTGAAGTACCTCTCACTCTTCTGCTCTGGGAAACATCGAACAAAACCC
TGAAGGACTGGAGAGGAGGAACATGTACCACTTTCTAGCCCGCTGGATTG
GTTAACTGGACGATGCCGTTGCTGGTCCTGAAAGTTTTCTGTCCCCTTCC
ATATCCATTGGGTCGCTTTTTTCTTTCTTGTGTGTCGTGCCAATATTCCG
ATTCTTTTTATGTTCTTGCGTTTATTTCCCCGCAATTACTACCCTTTTTC
CTTGGGGTTGGCTCTTTTTCTATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_n04.g1 MSMg01no458_n04.g1 CHROMAT_FILE:
MSMg01no458_n04.g1 PHD_FILE: MSMg01no458_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:31 2005
         (434 letters)



>mm_chr8_8586150_8586983
          Length = 834

 Score =  692 bits (358), Expect = 0.0
 Identities = 406/434 (93%), Gaps = 21/434 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctcccatgcgcccaacggttttggttcagaaaccatctgggttttagaagggaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aattctcccatgcgcccaacggttttggttcagaaaccatctgggttttagaagggaccc 406

                                                                       
Query: 61  gacagcaccaggctgtgacacccaggggaaggtgacaggcctgagatagctctcttcctc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gacagcaccaggctctgacacccaggggaaggtgacaggcctgagatagctctcttcctc 346

                                                                       
Query: 121 tcttggaagtagagggcactattaagggatccagaatgactctaaggctgaggctgctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 345 tcttggaagtagagggcactattaagggatccagaatgactctaaggctgaagctgctcc 286

                                                                       
Query: 181 aggcaaccccgccgtgtgtgggatctgagctttcccattccatacagagaagaaggcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aggcaaccccgccgtgtgtgggatctgagctttcccattccatacagagaagaaggcttt 226

                                                                       
Query: 241 gcagccagcatttatttgaagggggtcgggggcggggggggggggagacccaaccctaga 300
           |||||||||| | ||||||||||||        ||||||||         ||||||||||
Sbjct: 225 gcagccagcagtcatttgaaggggg--------gggggggg---------caaccctaga 183

                                                                       
Query: 301 gtatctcagagctgttgggagtagagagaaggtatgcatgcttcatcctggactcaccag 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 182 gtatctcagagctgttgggagtagagagaaggcatgcatgcttcatcctggactcaccag 123

                                                                       
Query: 361 ctactttggacaagacccttcctgtccacttccacgtgcatgctgacttcagcaaaacac 420
           |||||||||||||||||||||||||||||||||||||||    ||||||||||||||| |
Sbjct: 122 ctactttggacaagacccttcctgtccacttccacgtgc----tgacttcagcaaaacgc 67

                         
Query: 421 atctctcatcagtt 434
           |||||||| |||||
Sbjct: 66  atctctcagcagtt 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)