ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCCTTTTCAATAAACAAAAAAATGCAGATGTGAAAATATAGCACATA
TTTATTGGTTTCGTCTCTTCAAAAGGTGGATTTGAATAAATAAGAACTAC
ATAGGACTGTTCTGTTTCACTTTGTCTGCAGAATGAGAGAACCCTTCTGT
GGAAGAGCATCCTTCAGCGCTTCTACTCTCATAACCTCTAAAACAAACAA
GACCCTGAAAGAGATTGTATCTCCTTTTATATGCTAAAAACAATCTAGAT
TTCCTGACGAGAATGTTTACATACTTGTATGAAAGTCTCTTCAAATACTT
CATAAATGAAACATTCTTACCCGCACCCTTTTCTGTTACAGGATCTTACA
CAACCAACAGTGATCTACAAACATAGGATCCTCCTTCCCCTGTCTCCTGG
CATTGTGGATCAGAGGTATGCCCTCCTGTGTCTGGAGTCACTCAGAGTCA
GCAGTCTGTCAAAATTTTAATAAACAAACAAACAAACAAACAAACAAAAG
AGGCATTATTAAACACTGGTCAGGATTATGGATATTGACCAGGTCCATAA
CTGAGACTCCCGCTCTGAGTAGGTCTCTGAAATACTTATTCCGAAGCTAA
AAAAGGGTAAACTCATAAGCCTATTAACTTTCCCCCTTAAGGGATTCAGC
ACCAACCTAAAAACCCCCAGGGGTTCCCCTTTTTAAAATGGGGCCTTAGG
GGATAAAACCTCTTCCTGTGTTN

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAAATCTGCCTGCCTCTGCTTCCAGAG
AGCTGGGATTAAAGGCGTGCACCACCACGCCCAGCTTATCCTAATGTTTA
ATGTAGAGTTAAGATGCACATGGCTTCAGTAGAAAGCACATGCTAATTGA
GACTAATCACATGTCAGTTATTGGGAAGCTCACTGTATCTCCATGGTGAT
GGAAAGGCGTGTGTTGGGGATCAGTGTCTCTGAATGTGGCTCCCCAACAG
TAGTGCCTCTTTTTTATTCTGTTCTCCTGTGCTTCATTAGTGACAGAAAG
GTTGTCCCCAGTTTTATCCTCAGTGGTCATGACAGAGACAAGTCTTCAGC
AATCCTCTAGCACTCTCTCAGTCTTCTGGGTGAAACCCAACATCACCTGA
AACAGGACAGTCCCCAGTGGCTGTGGTACACAATGTGAAGTGACTTATGG
GGTCAGGAATGTGAAGTAGAAACAGCAGTGGCGCCTGGCTCTCACTTCCT
TCTGGTTCAGGGGTTCTCCGGCCATGGATGGTTAACGTACCTTTGGAAAC
CCCCTGAATGTCCCTACATTTTATAACCGATTACTCCGACAAATATCTTC
TCTTTTTCCGCCCCCAACTACTTGTCGCCCATTCCGTCTTCACACTCTTT
TTCCTTACTTTGACTTCTCCCCCCCCTCTTCTTTTTCCTCTTTTCCCTCT
TTCCTTG

Query= MSMg01no459_d09.b1 MSMg01no459_d09.b1 CHROMAT_FILE:
MSMg01no459_d09.b1 PHD_FILE: MSMg01no459_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:03 2005
         (488 letters)



>mm_chr8_29350424_29351312
          Length = 889

 Score =  826 bits (427), Expect = 0.0
 Identities = 464/485 (95%), Gaps = 15/485 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctccttttcaataaacaaaaaaa-tgcagatgtgaaaatatagcacatatttat 63
           |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctccatttaaataaacaaaaaaaatgcagatgtgaaaatatagcacatatttat 264

                                                                       
Query: 64  tggtttcgtctcttcaaaaggtggatttgaataaataagaactacataggactgttctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggtttcgtctcttcaaaaggtggatttgaataaataagaactacataggactgttctgt 324

                                                                       
Query: 124 ttcactttgtctgcagaatgagagaacccttctgtggaagagcatccttcagcgcttcta 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 ttcactttgtctgcagaatgagagaacccttctgtggaagagcatccttctgcgcttcta 384

                                                                       
Query: 184 ctctcataacctctaaaacaaacaagaccctgaaagagattgtatctccttttatatgct 243
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ctctcataacctttaaaacaaacaagaccctaaaagagattgtatctccttttatatgct 444

                                                                       
Query: 244 aaaaacaatctagatttcctgacgagaatgtttacatacttgtatgaaagtctcttcaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaacaatctagatttcctgacgagaatgtttacatacttgtatgaaagtctcttcaaa 504

                                                                       
Query: 304 tacttcataaatgaaacattcttacccgcacccttttctgttacaggatcttacacaacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacttcataaatgaaacattcttacccgcacccttttctgttacaggatcttacacaacc 564

                                                                       
Query: 364 aacagtgatctacaaacataggatcctccttcccctgtctcctggcattgtggatcagag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacagtgatctacaaacataggatcctccttcccctgtctcctggcattgtggatcagag 624

                                                                       
Query: 424 gtatgccctcctgtgtctggagtcactcagagtcagcagtctgtcaaaattttaataaac 483
           ||||||||||||||||||||||              ||||||||||||||||||| ||||
Sbjct: 625 gtatgccctcctgtgtctggag--------------cagtctgtcaaaattttaacaaac 670

                
Query: 484 aaaca 488
           |||||
Sbjct: 671 aaaca 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space:   420162
Effective search space used:   420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)