BAC Information

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BAC

Clone NameMSMg01-459E22
Chromosome8 (Build37)
Map Location 73,772,013 - 73,772,444
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377
Downstream gene2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459E22.T7 (MSMg01no459_e22.b1)MSMg01-459E22.TJ (MSMg01no459_e22.g1)
ACCAG544933AG544934
length758761
length of high quality
(start - end)
436 (44 - 479)366 (78 - 443)
definitionCHROMAT_FILE: MSMg01no459_e22.b1 PHD_FILE: MSMg01no459_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:11 2005CHROMAT_FILE: MSMg01no459_e22.g1 PHD_FILE: MSMg01no459_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGTACTTGGAGCATACACCCTGACTACTTCCATTCTATTGAAATT
GTGTAAAATTAACAATTGAAAGCAGACAGTTCCTTAGTGGGTAGTGGTTC
AGTGTTGTGCAACCCTCACAGCTGTCCATTCCAGAACTTGTCCATAGCCC
TAGAATACCCATCACTCCAGCCCCTGGCAGCTTCTGTTCTGCTTCCTGCC
TCGGTGGACATTGCTTGTCAGTAGGGTCACACTCATACACACAAGGTCTG
TGCTGGGATATTTCTTTGTTTTTGTCATGCAGACCAGGCTGGCCCAAACT
TCTTGTATAACCAAGGATGTCCTTGTATTCCTGATCCTCCTGCCTCCACT
GCCCCAGTGCTGGGGTGACAGGTGCAACCACCTTCAGACTACATTTTGAG
GGATGGAACTCAGGACTCCACATGCTGGGTAGTCACCCTGCCCCTGAGCA
ATAGCCACTGTAGACTAGTGCAGGATTCCTACTGTACCTGAGGGCTGTTC
CCGTTGTTGTTGGACTGACTTCTGTTAAATTCACTGGGGTCTGCTTAAAT
TGGGTTTCCCCGACCGTTCCTTGAGAGAATGGGGGATTAATCCCCCCCCA
TTATTTGCGCAATTTCTGCATGCTTTTTCCCTTTTACTCGTCTTTTTAGA
CACTGTCTTTCTTTCCCCCACGCATTACACACCTTTCCCGCTACCTTTTT
TTTGATTC
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCCAGAGATGGTAAGGCATA
TTTATAATTCTAACTGTGAGATATGCAGTAGTGAACAACAAAGACTGTCC
TTTGACTTCTGTCTTAGGGTTTGTATTCCTGCACAAAACACCATGGCCAA
GCAGGAAGTTGGAGAGGAAAGGGTTTATTCAGCTTAAACTTCCACATTGC
TGTGACTCACCAAAGGAAGTCAGGATAGGAACTCATACAAGGCAGGACCT
TGGAGGTAGGAGCTGATGCAGAGGCCATGGAGGGGTACTGCTTACTGGAT
TGCTTAGCTTGCTTTCTTATAGAATTCAGGACTACCAGATCAGTGATGGC
ACCACCGACAATGGGCTGATCCCCCTTGATCACTAATTGAGAAAATACTT
TAAAGCTGGATCTCATGGAGGCATTTCCTCAAGGGAAGCTCCTTTCTCTG
TGATAACTTCACTCTGTGTCAAGTTGACACACAAACCTGTGAGTAAACTT
CCCAAACACATTGTTTGTGAAAGTACCCACCGTGTATTTTCATTTGGATA
AACAACCTACCCCCTCCTTTCTCTCCTCTCTCCCTTCGTTTTTCTTTTTT
CCCATTACCTTCTCCCTCCTTTCTCCTTCTCTTTTCCTCCTTCAGTATCC
TTCTCTTTTTTCTTCTATACTCCTCCCTTCTTTATCTTTACTCCCCCTCT
TTTTCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_e22.b1 MSMg01no459_e22.b1 CHROMAT_FILE:
MSMg01no459_e22.b1 PHD_FILE: MSMg01no459_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:11 2005
         (436 letters)



>mm_chr8_73771819_73772654
          Length = 836

 Score =  828 bits (428), Expect = 0.0
 Identities = 431/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagtacttggagcatacaccctgactacttccattctattgaaattgtgtaaa 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaattctcagtacatggagcatacaccctgactacttccattctattgaaattgtgtaaa 567

                                                                       
Query: 65  attaacaattgaaagcagacagttccttagtgggtagtggttcagtgttgtgcaaccctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attaacaattgaaagcagacagttccttagtgggtagtggttcagtgttgtgcaaccctc 507

                                                                       
Query: 125 acagctgtccattccagaacttgtccatagccctagaatacccatcactccagcccctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acagctgtccattccagaacttgtccatagccctagaatacccatcactccagcccctgg 447

                                                                       
Query: 185 cagcttctgttctgcttcctgcctcggtggacattgcttgtcagtagggtcacactcata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cagcttctgttctgcttcctgcctcggtggacattgcttgtcagtagggtcacactcata 387

                                                                       
Query: 245 cacacaaggtctgtgctgggatatttctttgtttttgtcatgcagaccaggctggcccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacacaaggtctgtgctgggatatttctttgtttttgtcatgcagaccaggctggcccaa 327

                                                                       
Query: 305 acttcttgtataaccaaggatgtccttgtattcctgatcctcctgcctccactgccccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acttcttgtataaccaaggatgtccttgtattcctgatcctcctgcctccactgccccag 267

                                                                       
Query: 365 tgctggggtgacaggtgcaaccaccttcagactacattttgagggatggaactcaggact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgctggggtgacaggtgcaaccaccttcagactacattttgagggatggaactcaggact 207

                       
Query: 425 ccacatgctggg 436
           ||||||||||||
Sbjct: 206 ccacatgctggg 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)