BAC Information

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BAC

Clone NameMSMg01-460G02
Chromosome8 (Build37)
Map Location 32,991,760 - 33,172,522
singlet/doubletdoublet
Overlap geneNrg1
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
Downstream gene2010007E15Rik, EG666589, EG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460G02.T7 (MSMg01no460_g02.b1)MSMg01-460G02.TJ (MSMg01no460_g02.g1)
ACCAG545751AG545752
length722723
length of high quality
(start - end)
541 (37 - 577)494 (68 - 561)
definitionCHROMAT_FILE: MSMg01no460_g02.b1 PHD_FILE: MSMg01no460_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:36 2005CHROMAT_FILE: MSMg01no460_g02.g1 PHD_FILE: MSMg01no460_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,172,072 - 33,172,522)(32,991,760 - 32,992,253)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAT
TTTCCCAAACTTCATTTCATATTTTAATCTTTGAGGCCTGGATATATGGT
AGCACATGTCTGCAATACTACTAACAGTGGTTAGCCCTTGGAAGACAGAT
CTGCAGATCCCAAGGTTGAGACCAGCATAGGCTACACAATGACTTCAAAT
CCCACTTGAACTATATAGGAAGACTCTGTGTTAAGAAACCATGTATAGGA
TGTGGCTCAGTGGGAGAACATTTCCCAGTACCCTCTTTGTAGTAGCTAAT
TTTTTATTACTGTAATGAAATACCAGGATCAGAGCTAACTTAAGGAAGGG
TGGGTTAGTTTTGGCTTACACGTCCTGAAGGGAAAGTCCACAATGGCAGA
ATAGGTAGGCATGACAGCAGAGAGCCAGAGCAGGAAACTAAGAGATCACG
TCTTCAATTGCAAATGTGAAACAGAGAAAGTGAGCAGAAAGTTGGGCGAT
GCTATAGACTCAAAGCCCAGCCACAGTGGCTTGCGTTCTCTTAGCAAGGC
CCCACCTCCTAAAGGTTCTTCAACCTTCTTAAACAGTGCTAACAAATTTA
GAGCAAATGCCCCAATATCTGTGACTATGGGGAACACTTCTCATTCAACA
ATTACAGCCTCTTTCAGAAGTCTTGATGCTTTTTTTTTTTCTCTTAAATT
TATTAAGCCCCCTTCCCTTACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAACTACATGAATCCTGCAGGAGGCATTATAAA
GATCTCACTGTTAGCTCAACTCCCGGGCAAATCTGTTCTACACACTAGGC
CAATTTCCTTTGGAGGAGCTACATAGATGCTCCCACATCTATGAAGTGCT
GTGACTTCAGGTGTGTTACTGCATGTCATTCAGGTCCTTATAGAGCCACT
CCCCATTTATTATTATCCTAATATTTAAAGTGATCAGTTGGGCCTGCATA
TAAACTATGAATCCAACCTAAACATGAATATGTTTGCCTGCTCCCTGACC
CATTTGTGATACAGATGAATTGCCCTTTTCCTTCTTAGGTGAGGATTCTG
GATTACTAGGTAAGTGTTCCTGAGACAACTCAAATTTGCAATCCATGGAA
GGAAGCCAGTCTGCATAGACTGTGTGACTCAAGGAGATACCAGGTAAAGA
CCTTCCCTGGATGCATGGCCTTTGCTGAGAGGCTCTGCTCTAGGAAGCTG
GTTCTCTGGTGATGCATTAAGCACTACAGAATAAATCTTTCTGTCTGTTG
CCAGCAGCTAGCGGTGCTTAGTTCTGAAACTGCAGCTATGCCCATATTTT
AACTTTTGGGCCCAGCCTAAAGGAACCAAACAATAATATTGTATTGGTGG
TAAATCTTTATAAAAGCTTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_g02.b1 MSMg01no460_g02.b1 CHROMAT_FILE:
MSMg01no460_g02.b1 PHD_FILE: MSMg01no460_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:36 2005
         (541 letters)



>mm_chr8_33172072_33173012
          Length = 941

 Score =  872 bits (451), Expect = 0.0
 Identities = 451/451 (100%)
 Strand = Plus / Minus

                                                                       
Query: 21  aaacttcatttcatattttaatctttgaggcctggatatatggtagcacatgtctgcaat 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaacttcatttcatattttaatctttgaggcctggatatatggtagcacatgtctgcaat 392

                                                                       
Query: 81  actactaacagtggttagcccttggaagacagatctgcagatcccaaggttgagaccagc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 actactaacagtggttagcccttggaagacagatctgcagatcccaaggttgagaccagc 332

                                                                       
Query: 141 ataggctacacaatgacttcaaatcccacttgaactatataggaagactctgtgttaaga 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ataggctacacaatgacttcaaatcccacttgaactatataggaagactctgtgttaaga 272

                                                                       
Query: 201 aaccatgtataggatgtggctcagtgggagaacatttcccagtaccctctttgtagtagc 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaccatgtataggatgtggctcagtgggagaacatttcccagtaccctctttgtagtagc 212

                                                                       
Query: 261 taattttttattactgtaatgaaataccaggatcagagctaacttaaggaagggtgggtt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 taattttttattactgtaatgaaataccaggatcagagctaacttaaggaagggtgggtt 152

                                                                       
Query: 321 agttttggcttacacgtcctgaagggaaagtccacaatggcagaataggtaggcatgaca 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agttttggcttacacgtcctgaagggaaagtccacaatggcagaataggtaggcatgaca 92

                                                                       
Query: 381 gcagagagccagagcaggaaactaagagatcacgtcttcaattgcaaatgtgaaacagag 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  gcagagagccagagcaggaaactaagagatcacgtcttcaattgcaaatgtgaaacagag 32

                                          
Query: 441 aaagtgagcagaaagttgggcgatgctatag 471
           |||||||||||||||||||||||||||||||
Sbjct: 31  aaagtgagcagaaagttgggcgatgctatag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no460_g02.g1 MSMg01no460_g02.g1 CHROMAT_FILE:
MSMg01no460_g02.g1 PHD_FILE: MSMg01no460_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:36 2005
         (494 letters)



>mm_chr8_32991560_32992453
          Length = 894

 Score =  955 bits (494), Expect = 0.0
 Identities = 494/494 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactacatgaatcctgcaggaggcattataaagatctcactgttagctcaactcccggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactacatgaatcctgcaggaggcattataaagatctcactgttagctcaactcccggg 260

                                                                       
Query: 61  caaatctgttctacacactaggccaatttcctttggaggagctacatagatgctcccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatctgttctacacactaggccaatttcctttggaggagctacatagatgctcccaca 320

                                                                       
Query: 121 tctatgaagtgctgtgacttcaggtgtgttactgcatgtcattcaggtccttatagagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatgaagtgctgtgacttcaggtgtgttactgcatgtcattcaggtccttatagagcc 380

                                                                       
Query: 181 actccccatttattattatcctaatatttaaagtgatcagttgggcctgcatataaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actccccatttattattatcctaatatttaaagtgatcagttgggcctgcatataaacta 440

                                                                       
Query: 241 tgaatccaacctaaacatgaatatgtttgcctgctccctgacccatttgtgatacagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatccaacctaaacatgaatatgtttgcctgctccctgacccatttgtgatacagatg 500

                                                                       
Query: 301 aattgcccttttccttcttaggtgaggattctggattactaggtaagtgttcctgagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattgcccttttccttcttaggtgaggattctggattactaggtaagtgttcctgagaca 560

                                                                       
Query: 361 actcaaatttgcaatccatggaaggaagccagtctgcatagactgtgtgactcaaggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcaaatttgcaatccatggaaggaagccagtctgcatagactgtgtgactcaaggaga 620

                                                                       
Query: 421 taccaggtaaagaccttccctggatgcatggcctttgctgagaggctctgctctaggaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taccaggtaaagaccttccctggatgcatggcctttgctgagaggctctgctctaggaag 680

                         
Query: 481 ctggttctctggtg 494
           ||||||||||||||
Sbjct: 681 ctggttctctggtg 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)